Report for Sequence Feature Glyma03g33770
Feature Type: gene_model
Chromosome: Gm03
Start: 41254338
stop: 41257956
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g33770
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G09770 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:2996402-2997835 REVERSE LENGTH=388
SoyBase E_val: 2.00E-113 ISS
GO:0006499 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation
SoyBase N/A ISS
GO:0080144 GO-bp
Annotation by Michelle Graham. GO Biological Process: amino acid homeostasis
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0004842 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG4265
KOG
Predicted E3 ubiquitin ligase
JGI ISS
PTHR22996 Panther
MAHOGUNIN
JGI ISS
UniRef100_Q2HV40 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=2 Tax=Medicago truncatula RepID=Q2HV40_MEDTR
SoyBase E_val: 6.00E-150 ISS
UniRef100_UPI000233931D UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233931D related cluster n=1 Tax=unknown RepID=UPI000233931D
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g33770
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma03g33770
Paralog Evidence Comments
Glyma19g36510 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g33770 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g180500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g33770
Coding sequences of Glyma03g33770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g33770.1 sequence type=CDS gene model=Glyma03g33770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGCAACATCTCAAGCGGCGGCAATCCCCGTCGCCGACACAGCGGAGCTTCACGGCGGAGCCACCCGCCGCCGCCGCCGCCCGTTACGCCGCAGCCTGAGATCGCGGCGAATCCATTCGTGTACCATGGTGCTGCTGCACCGTACCCGAACCCTCCTCTGCATTACCCTCAGTACCATTACCCCGGTTACTACCCTCCGGTGCCACCCATGCCTTATCATCCTCATCAACATCAACATCATCATCGACACATGGACCCAGCGTGGATTCAGGGGCATTTCCCTAGTGGGCCCATGATGCCTAACCCTGCACCTTTCGTAGAGCATCAGAAAGCCGTTACAATAAAGAACGATGTCAACATCAGGAAAGAGACCCTTAAGCTTGAACCCGACGTAGAAAATTCTGGCCACTTCCTTGTTTCGTTTTCCTTCGATGCCACCGTTTCTGGCAGCATCACCATATATTTCTTTGCAAAAGAAGGTGAAGGCTGCATCCTCACACCAATGAAGGAAAACCAACTTGCACCAGTGTCTGTGCATTTCGAGCAAGGCCTTGGCCAGAAGTTTAGACAGGCAGCTGGAACTGGTATTGATTTTTCAGTGTTTGAAGAGTCTGAGTTATTGGAAAGGTGGGTGGAAAAGGATGTCTACCCTCTAGCAGTAAAGGCAGACGCATCCCCTGGTAATCATGATGAGTCAGATAGATCTCCAACATCTAGTAACACAAACTCTCAGATTACGCAAACGATGTTTGAGAAGGAGAAAGGAGAGTTCCGGGTGAAAGTTGTCAAGCAGATCTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTAGAAATTCAACGGAGAATGACCAAGGAAAATGTGTTATTTGCTTGTCAGAGCCCCGAGATACAATTGTCCTTCCCTGCCGGCATATGTGTATGTGTAGCGGATGTGCAAAGGATTCTAGGTTCCAGACAGATAGATGCTCAATTTGCAGACAACCAGTTGAGAGGCTGTTGGAGATATAG
Predicted protein sequences of Glyma03g33770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g33770.1 sequence type=predicted peptide gene model=Glyma03g33770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGNISSGGNPRRRHSGASRRSHPPPPPPVTPQPEIAANPFVYHGAAAPYPNPPLHYPQYHYPGYYPPVPPMPYHPHQHQHHHRHMDPAWIQGHFPSGPMMPNPAPFVEHQKAVTIKNDVNIRKETLKLEPDVENSGHFLVSFSFDATVSGSITIYFFAKEGEGCILTPMKENQLAPVSVHFEQGLGQKFRQAAGTGIDFSVFEESELLERWVEKDVYPLAVKADASPGNHDESDRSPTSSNTNSQITQTMFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIRNSTENDQGKCVICLSEPRDTIVLPCRHMCMCSGCAKDSRFQTDRCSICRQPVERLLEI*