Glyma03g33763 - SoyBase

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Report for Sequence Feature Glyma03g33763

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41251572
stop:	41252954
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g33763

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53400	AT	Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 47 (TAIR:AT5G03190.1); Has 285 Blast hits to 285 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). \| chr3:19798526-19799926 FORWARD LENGTH=466	SoyBase	E_val: 8.00E-129	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JPL7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPL7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LYW6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 n=1 Tax=Arabidopsis thaliana RepID=Q9LYW6_ARATH	SoyBase	E_val: 2.00E-114	ISS

Expression Patterns of Glyma03g33763

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g33763 not represented in the dataset	Glyma03g33763 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33763

Paralog	Evidence	Comments
Glyma19g36500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33763 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g180300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g33763

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g33763

Limit To All Plant Sequences

>Glyma03g33763.1   sequence type=CDS   gene model=Glyma03g33763   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCCAAGGTATTCAAATTCCAGATCCTCCAAGGCTCCATCGCTAAGCGCGTGGTCATTCGCTCAATACTACTCGCGTGCGCCGTCTCAATTGTCTCCATCTACCGCGCGCAATCCCTCTTCGATTTCGGAACCCTCGCTCCCATCGCCACGTACTTCGACTGCGTTTCCGGCTTCGAGGGCGTCACCTTTCGCCCTGGTTCCCACTTGCTCCGAACCCGCTTCTGGGCCTCCGCCAATTGCGAGAAAGACGCCAACTTGACCCTCTCCGTGGTCACCGACCTAACTGGTAACAATTTACTCTACACCGGAGCGAAAAGCCTCTGCGTCGGAGAAGGCTCCTCAATGGCCGTCACGGCAATGAAACAGTTAGGTTTCTCCAGCGTCAGCGCCGTCCAAACGCACCGTTTCGTGCAGAGGAACGTCCTGTACGAGGATAACTCCTTCGATTTCGTGTTCTCCAGAGACCTAGACAAGGTTTCTGTCCCAGCATTGCTGGTGCTCGAGGTTGAGCGTGTCCTTAAGCCACGTGGCATTGGTGCCTTTCTTGTAGGCACCACTAGTTCTCACCCCAATGATTTGATAAGAGCAGCCACACCCGTTTCCTCTTTGTTAAGGTCTTCCAATGTTGTGCATGTTGGTTCTGTCAACGAGCTTAACCTTGTTGTTTTCAAGAAACGAGTTGGAAACGCTACTTCATTTTACCAACATGGTAATTTACCCGCTGATTGTCCCAGTCTCACATTCACTAAATCCCTCATAGAGTTGATGGAGCCTCTCGTGAGTGAGAAACAAAAACCACCACCTCTTGAGTTTCACAAGAGGATTCCCTATTTGCCTAAATTTGTGGATGTTTCCACTAGGAAGAGGTTGGTGTATATTGACATTGGGGTAGGGGAGCTTCTTGATGCCAATGTTAGTGATTGGTTCCTACCATCGTACCCCATTGATCAGAAGGATTTCAATATTTATTTTGTTCACTACAACACTTCGATTATGTTGTCCCATGTGAAGCAACCTGGTATTACCTTTGTTTACCACCCTGGCTTGTCTGGTATTGATAAGGTCAATGCTAAGCTTGGTAGTGATGATGATGATGACATGGATCCTTTACTTGGGGAGGAGGAGAAGTTTGATTTCCTTGCCTGGTTCAAAGAAACTGTGCAATATGCTGATTTTGTGGTCCTCAAGATGAATGCAGGCAGTGTTGAACTCAAGTTCCTCTCTGATATATTTGAGAATGGAGCTATATGCTATGTTGATGAGTTGTTTCTCAAGTGTCCCGAGAGGGGAGGTGATGCCAGCAAGGGAAGTTGCATGGATATTTACAAGGATCTCCGAAGCAATGGTGTCTATGTGCATCAATGGTGGGGAGACTGA

Predicted protein sequences of Glyma03g33763

Limit To All Plant Sequences

>Glyma03g33763.1   sequence type=predicted peptide   gene model=Glyma03g33763   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAKVFKFQILQGSIAKRVVIRSILLACAVSIVSIYRAQSLFDFGTLAPIATYFDCVSGFEGVTFRPGSHLLRTRFWASANCEKDANLTLSVVTDLTGNNLLYTGAKSLCVGEGSSMAVTAMKQLGFSSVSAVQTHRFVQRNVLYEDNSFDFVFSRDLDKVSVPALLVLEVERVLKPRGIGAFLVGTTSSHPNDLIRAATPVSSLLRSSNVVHVGSVNELNLVVFKKRVGNATSFYQHGNLPADCPSLTFTKSLIELMEPLVSEKQKPPPLEFHKRIPYLPKFVDVSTRKRLVYIDIGVGELLDANVSDWFLPSYPIDQKDFNIYFVHYNTSIMLSHVKQPGITFVYHPGLSGIDKVNAKLGSDDDDDMDPLLGEEEKFDFLAWFKETVQYADFVVLKMNAGSVELKFLSDIFENGAICYVDELFLKCPERGGDASKGSCMDIYKDLRSNGVYVHQWWGD*

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