Glyma03g33750 - SoyBase

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Report for Sequence Feature Glyma03g33750

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41236464
stop:	41241946
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g33750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60580	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:24354298-24356706 FORWARD LENGTH=487	SoyBase	E_val: 3.00E-124	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1609	KOG	Protein involved in mRNA turnover and stability	JGI		ISS
PTHR23012	Panther	MEMBRANE ASSOCIATED RING FINGER	JGI		ISS
PTHR23012:SF37	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_B9S0M6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9S0M6_RICCO	SoyBase	E_val: 1.00E-155	ISS
UniRef100_UPI000233931A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233931A related cluster n=1 Tax=unknown RepID=UPI000233931A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g33750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33750

Paralog	Evidence	Comments
Glyma19g36490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g180200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g33750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g33750

Limit To All Plant Sequences

>Glyma03g33750.1   sequence type=CDS   gene model=Glyma03g33750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTGAAGCACATCGTTTTCCCAAGATTAATAATGACCAAGGCTCTTCTAGTATACCTCATAACCCAATTCAAAAGGATGTAGAGTCATCCGAAATAACTGAGGAACTCCCTAGTAGACATGCACATGGTAGAAGGAAAAACCTTATCTTGGAGATACCAACAAGAACACTAGATGAAACAAGAGAGGAATTTTTCAGAACAAACCAACCTCCAACTCCATCTCCTAGAAGCCAAATCAATGAGTTCCAAGGTCCTTTGTCAACCAAAAATATTAAATTTCACAAGATAAGTTCAGATGTTGAAGAGGCTTCCATCCCAGCACTTGACGGTTCCCCCCCGGAGCCACTGCAAGAGCCTATGATTTCAAGAACATTATCACCTAATGAGATGAAAATATCATCCTTACCTGTCACCCCAATTGCTCAGTCAAATCTGGAGTCTGGACATGGAGGGAACATTGCCTATCCAGCAACACATGTTAAGAAAGGACTGCAACTACCAATGCATCGTTCCCGTTCAGTTCCCGTGCTTACTGAAGATGACAGCACATATGTAGGTGCCATGTTTCGTATTGTTCCTACCACACCACGGTTGACAAAGAGCATTGCCACAACATCTATGAAATCTCCGCCTGACGATACCGTTGAAAATGAGGATGGGGAAGATATTCCTGAAGAAGAAGCCGTCTGCAGAATTTGTTTGATTGAATTGGGAGAAGGTTCTGATACACTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGAGTGTGCAGTTAAATGGTTTAGCATTAAAGGCAACAGAACATGTGATGTGTGCAAGCAGGAAGTTCAGAACCTTCCTGTCACTCTTCTACGAGTTTTAAATGGCCAAACACTTTACTTGACAAGGAGTAGAAGCCAACAATACAGGGTTTGGCAAAATATTCCCATTCTTGTGATTATCAACATGCTGGCATACTTTTGTTTCCTTGAGCAGCTACTTGTTTCAAGTATGGGATCTGGTGCTGTTGCCATTTCTCTCCCTTTTTCATGTATACTAGGTCTACTTGCAAGCATGACATCCACAATAATGGTGACGTGTGAACATGTTTGGGTTTATGCAATTGCCCAGTTTGTTATGGTGGTTCTCGCTGGACGTCTTTTCTATTCACTGCTTAATAAGCAAGCCGTTCTATCTATCCTACTTGCTACATTTACTGGGTTTGGAGCTGTGATGTGTGGAGCTTATATTCTTATTGAGTTTTTGAAATGGAGAAGACGATGGCTTGGTTCCCAAGAGGTGGTACTGCCTCATTAA

Predicted protein sequences of Glyma03g33750

Limit To All Plant Sequences

>Glyma03g33750.1   sequence type=predicted peptide   gene model=Glyma03g33750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATEAHRFPKINNDQGSSSIPHNPIQKDVESSEITEELPSRHAHGRRKNLILEIPTRTLDETREEFFRTNQPPTPSPRSQINEFQGPLSTKNIKFHKISSDVEEASIPALDGSPPEPLQEPMISRTLSPNEMKISSLPVTPIAQSNLESGHGGNIAYPATHVKKGLQLPMHRSRSVPVLTEDDSTYVGAMFRIVPTTPRLTKSIATTSMKSPPDDTVENEDGEDIPEEEAVCRICLIELGEGSDTLKMECSCKGELALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRVLNGQTLYLTRSRSQQYRVWQNIPILVIINMLAYFCFLEQLLVSSMGSGAVAISLPFSCILGLLASMTSTIMVTCEHVWVYAIAQFVMVVLAGRLFYSLLNKQAVLSILLATFTGFGAVMCGAYILIEFLKWRRRWLGSQEVVLPH*

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