Glyma03g33730 - SoyBase

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Report for Sequence Feature Glyma03g33730

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41227384
stop:	41228350
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g33730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03170	AT	Annotation by Michelle Graham. TAIR10: FASCICLIN-like arabinogalactan-protein 11 \| chr5:752898-753638 REVERSE LENGTH=246	SoyBase	E_val: 3.00E-81	ISS
GO:0009834	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
PTHR10900	Panther	TRANSFORMING GROWTH FACTOR	JGI		ISS
PTHR10900:SF23	Panther	FLA (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN)	JGI		ISS
PF02469	PFAM	Fasciclin domain	JGI		ISS
UniRef100_G7L2R9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fasciclin-like arabinogalactan protein n=1 Tax=Medicago truncatula RepID=G7L2R9_MEDTR	SoyBase	E_val: 2.00E-101	ISS
UniRef100_I1JPL3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPL3_SOYBN	SoyBase	E_val: 3.00E-175	ISS

Expression Patterns of Glyma03g33730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g33730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g180000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g33730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g33730

Limit To All Plant Sequences

>Glyma03g33730.1   sequence type=CDS   gene model=Glyma03g33730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAGCTAATCCATTTTCTCCTTTTCCTTTTCATCCAAACAATTTCAGCCCAAACACCAGCAGCACCAGCGGGCCCCACCAACATCACCCAAGTTCTAGAGAAAGCAGGACAATTCACAACCTTCATTAAACTCCTCAAAGCTTCACAAATAGCTGATAGAATCAATTCACAGCTGAACAACTCAAACCAAGGCCTAACCGTGTTTGCACCCACTGATAATGCATTCTCAAGCCTCAAAGCAGGAACATTAAACTCCATAAACTCACAAGACCAAATGCAGCTGATACAATTCCACATTCTCCCCACTCTCTACACCATCTCACAGTTCCAAACCGCAAGTAACCCCTTGCACACGCAAGCTGGAAACAGTGATGATGGAGAGTATCCTTTAAATGTGACCACCTCAGGGAACCAAGTGAATGTAACAACTGGGGTGGTTGATACAACAGTGTCCAATACTATCTACAGTGATACTCAGCTCTCAGTGTATCAGGTGGATAAGGTGCTTCTTCCTATGAAGCTTTTCGGCGCGACGGCACCGGCTGCTGCACCGGCGGAGGCTCCTGCGCCATCCAAGCCGGAGAAAAATGTCCGGGCAGGGGCTGCTGATGCTTCATCTGGGTCATCGGGTTCATCGGTTGATGCTTCGAATGCAGTGAGTTTGAATAGAAAGACAGTTAAAGGTTTTATCATGACCGTGGCAATCATTGTTTCTTGTTTGTGGATGTAA

Predicted protein sequences of Glyma03g33730

Limit To All Plant Sequences

>Glyma03g33730.1   sequence type=predicted peptide   gene model=Glyma03g33730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKLIHFLLFLFIQTISAQTPAAPAGPTNITQVLEKAGQFTTFIKLLKASQIADRINSQLNNSNQGLTVFAPTDNAFSSLKAGTLNSINSQDQMQLIQFHILPTLYTISQFQTASNPLHTQAGNSDDGEYPLNVTTSGNQVNVTTGVVDTTVSNTIYSDTQLSVYQVDKVLLPMKLFGATAPAAAPAEAPAPSKPEKNVRAGAADASSGSSGSSVDASNAVSLNRKTVKGFIMTVAIIVSCLWM*

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