Glyma03g33620 - SoyBase

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Report for Sequence Feature Glyma03g33620

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41138318
stop:	41140951
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g33620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37110	AT	Annotation by Michelle Graham. TAIR10: PLAC8 family protein \| chr2:15592689-15593726 FORWARD LENGTH=242	SoyBase	E_val: 2.00E-106	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR15907	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR15907:SF11	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04749	PFAM	PLAC8 family	JGI		ISS
UniRef100_I1JPK1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPK1_SOYBN	SoyBase	E_val: 2.00E-167	ISS
UniRef100_Q6ULR9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SAT5 n=5 Tax=Papilionoideae RepID=Q6ULR9_PEA	SoyBase	E_val: 3.00E-119	ISS

Expression Patterns of Glyma03g33620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33620

Paralog	Evidence	Comments
Glyma19g36330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g178800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g33620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g33620

Limit To All Plant Sequences

>Glyma03g33620.2   sequence type=transcript   gene model=Glyma03g33620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTGAATCCAAGCCAACGGTTGTGTGTTGGTATCTTATTAAAGGAAGTGAGAAATAGTAGCTTGACGCGTGTTGGAGTGTTTGGCAATAAAAGGAGGAGACGACGACGCGGGGAATCTCCGGTCTCCACCGACATCCCTTCTCTTCCAAATCCTGTGATCCCATTCCAATCCGTTCCGTTCAGCTCAATCTCAAAATCTCAATGGCCGATAATGAGCAACCGAATAACGAGGAGGCAAGTCCTCTTCTCCACCAGCCCCATCCCCAACCCAAATCCGAACCACCAACGCCACCTGAGACTCCCGAGTTTCTCCTCGGCTGGACCGCTGATGGGCTCCCTCTGGCCCACGCCAGCGTCGTGGGCCAGCCCATGGGCCGCGCCCCTTGGAACTCCTCCATCTGCGCCTGTCTCGGCCAAAACGATCACTTCTGCAGCAGCGATCTCGAAGTCTTCTTGGGAGTGTGGCTCCTTGTGTGCTGTATGGAAGCAATGTTGAGAGACTTGGATCTGCTCGTGGGACATTTGCCAATCACTGCTTGCCTTATTCTGGAATGTATATAATTGGAAATTCCTGCTTTGGTTGGAATTGCCTTGCACCCTGGTTTTCCTATCCTAGCCGGACGGCTATTCGTCGCAGGTTCAATTTAGAGGGAAGTTGCGAAGCACTTAATAGATCATGCGGGTGCTGCGGAAGCATTTTGGAAGATGAGGTGCAGCGTGAACATTGTGAGTCAGCATGTGACTTGGCAACTCATGTCTTCTGTCATGTATGTGCTCTTTGTCAAGAAGGTCGTGAGCTCCGTCGTAGGTTACCTCATCCTGGCTTTAATGCTCAACCAGTACTGGTTATGATTCCCCCAGGAGAGCAGACCATGGGACGTGAGGCTTGAAAATTTTCTCCTTCATCTTGGAAGTGCTATTCGTGCGTATATTACCGTTGTCTTGCTCTATATTATATAACTTGATGTTGTCGAACCGTGTGATGACTTTATTAAAAGAGGGCCCTTTATTATTATTATTTTTTTTTATAAATAAGAACATGAAACATCATCATAATTTCTGTTTGCTTCCCTACTGTTTTGTATCATATATGGATTTGAAATGATATTGGAGAAATTTTTCTCCTAGTGTCTATGCGTAATTACATTCCTT

>Glyma03g33620.3   sequence type=transcript   gene model=Glyma03g33620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTGAATCCAAGCCAACGGTTGTGTGTTGGTATCTTATTAAAGGAAGTGAGAAATAGTAGCTTGACGCGTGTTGGAGTGTTTGGCAATAAAAGGAGGAGACGACGACGCGGGGAATCTCCGGTCTCCACCGACATCCCTTCTCTTCCAAATCCTGTGATCCCATTCCAATCCGTTCCGTTCAGCTCAATCTCAAAATCTCAATGGCCGATAATGAGCAACCGAATAACGAGGAGGCAAGTCCTCTTCTCCACCAGCCCCATCCCCAACCCAAATCCGAACCACCAACGCCACCTGAGACTCCCGAGTTTCTCCTCGGCTGGACCGCTGATGGGCTCCCTCTGGCCCACGCCAGCGTCGTGGGCCAGCCCATGGGCCGCGCCCCTTGGAACTCCTCCATCTGCGCCTGTCTCGGCCAAAACGATCACTTCTGCAGCAGCGATCTCGAAGTTTGTCTTCTTGGGAGTGTGGCTCCTTGTGTGCTGTATGGAAGCAATGTTGAGAGACTTGGATCTGCTCGTGGGACATTTGCCAATCACTGCTTGCCTTATTCTGGAATGTATATAATTGGAAATTCCTGCTTTGGTTGGAATTGCCTTGCACCCTGGTTTTCCTATCCTAGCCGGACGGCTATTCGTCGCAGGTTCAATTTAGAGGTATGTTACTTTCTTATTCTATGCTCCTTATAATCTAGTGATGTGTTTAGAAACCTCCTATTTGTGAGGGTGTATGCGAGAAAGAAGAATTGTAGGCGATCACAGTCCTAATTGGGCAGCATGACTGGGGGTAATTAACTGCCAGCGTGGATGTTGGGGGAAATCGGAGGGAAATTTTGTAGAAAGCTACAGTAAAATAAAACGAGAGCAGAGTAGAGAGGGGAGGTAAGGAAGTAGTGACCAAGGAGTGCATAGGAGAGATGAGGGTGTATCTCAAACACCCTATGCTACTGTATCTTTTTTCCTTCTGTTCAGTCTTGTAACCCATTGTAGATCTATCTATGTTTCTGCTAATATGACACTGACACCAGGGATTATGATGAGATGT

Coding sequences of Glyma03g33620

Limit To All Plant Sequences

>Glyma03g33620.1   sequence type=CDS   gene model=Glyma03g33620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGATAATGAGCAACCGAATAACGAGGAGGCAAGTCCTCTTCTCCACCAGCCCCATCCCCAACCCAAATCCGAACCACCAACGCCACCTGAGACTCCCGAGTTTCTCCTCGGCTGGACCGCTGATGGGCTCCCTCTGGCCCACGCCAGCGTCGTGGGCCAGCCCATGGGCCGCGCCCCTTGGAACTCCTCCATCTGCGCCTGTCTCGGCCAAAACGATCACTTCTGCAGCAGCGATCTCGAAGTTTGTCTTCTTGGGAGTGTGGCTCCTTGTGTGCTGTATGGAAGCAATGTTGAGAGACTTGGATCTGCTCGTGGGACATTTGCCAATCACTGCTTGCCTTATTCTGGAATGTATATAATTGGAAATTCCTGCTTTGGTTGGAATTGCCTTGCACCCTGGTTTTCCTATCCTAGCCGGACGGCTATTCGTCGCAGGTTCAATTTAGAGGGAAGTTGCGAAGCACTTAATAGATCATGCGGGTGCTGCGGAAGCATTTTGGAAGATGAGGTGCAGCGTGAACATTGTGAGTCAGCATGTGACTTGGCAACTCATGTCTTCTGTCATGTATGTGCTCTTTGTCAAGAAGGTCGTGAGCTCCGTCGTAGGTTACCTCATCCTGGCTTTAATGCTCAACCAGTACTGGTTATGATTCCCCCAGGAGAGCAGACCATGGGACGTGAGGCTTGA

>Glyma03g33620.2   sequence type=CDS   gene model=Glyma03g33620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGATAATGAGCAACCGAATAACGAGGAGGCAAGTCCTCTTCTCCACCAGCCCCATCCCCAACCCAAATCCGAACCACCAACGCCACCTGAGACTCCCGAGTTTCTCCTCGGCTGGACCGCTGATGGGCTCCCTCTGGCCCACGCCAGCGTCGTGGGCCAGCCCATGGGCCGCGCCCCTTGGAACTCCTCCATCTGCGCCTGTCTCGGCCAAAACGATCACTTCTGCAGCAGCGATCTCGAAGTCTTCTTGGGAGTGTGGCTCCTTGTGTGCTGTATGGAAGCAATGTTGAGAGACTTGGATCTGCTCGTGGGACATTTGCCAATCACTGCTTGCCTTATTCTGGAATGTATATAA

>Glyma03g33620.3   sequence type=CDS   gene model=Glyma03g33620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGATAATGAGCAACCGAATAACGAGGAGGCAAGTCCTCTTCTCCACCAGCCCCATCCCCAACCCAAATCCGAACCACCAACGCCACCTGAGACTCCCGAGTTTCTCCTCGGCTGGACCGCTGATGGGCTCCCTCTGGCCCACGCCAGCGTCGTGGGCCAGCCCATGGGCCGCGCCCCTTGGAACTCCTCCATCTGCGCCTGTCTCGGCCAAAACGATCACTTCTGCAGCAGCGATCTCGAAGTTTGTCTTCTTGGGAGTGTGGCTCCTTGTGTGCTGTATGGAAGCAATGTTGAGAGACTTGGATCTGCTCGTGGGACATTTGCCAATCACTGCTTGCCTTATTCTGGAATGTATATAATTGGAAATTCCTGCTTTGGTTGGAATTGCCTTGCACCCTGGTTTTCCTATCCTAGCCGGACGGCTATTCGTCGCAGGTTCAATTTAGAGGTATGTTACTTTCTTATTCTATGCTCCTTATAA

Predicted protein sequences of Glyma03g33620

Limit To All Plant Sequences

>Glyma03g33620.1   sequence type=predicted peptide   gene model=Glyma03g33620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADNEQPNNEEASPLLHQPHPQPKSEPPTPPETPEFLLGWTADGLPLAHASVVGQPMGRAPWNSSICACLGQNDHFCSSDLEVCLLGSVAPCVLYGSNVERLGSARGTFANHCLPYSGMYIIGNSCFGWNCLAPWFSYPSRTAIRRRFNLEGSCEALNRSCGCCGSILEDEVQREHCESACDLATHVFCHVCALCQEGRELRRRLPHPGFNAQPVLVMIPPGEQTMGREA*

>Glyma03g33620.2   sequence type=predicted peptide   gene model=Glyma03g33620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADNEQPNNEEASPLLHQPHPQPKSEPPTPPETPEFLLGWTADGLPLAHASVVGQPMGRAPWNSSICACLGQNDHFCSSDLEVFLGVWLLVCCMEAMLRDLDLLVGHLPITACLILECI*

>Glyma03g33620.3   sequence type=predicted peptide   gene model=Glyma03g33620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADNEQPNNEEASPLLHQPHPQPKSEPPTPPETPEFLLGWTADGLPLAHASVVGQPMGRAPWNSSICACLGQNDHFCSSDLEVCLLGSVAPCVLYGSNVERLGSARGTFANHCLPYSGMYIIGNSCFGWNCLAPWFSYPSRTAIRRRFNLEVCYFLILCSL*

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