Glyma03g33610 - SoyBase

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Report for Sequence Feature Glyma03g33610

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41130591
stop:	41131451
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g33610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03110	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: protamine P1 family protein (TAIR:AT2G37100.1); Has 81 Blast hits to 73 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr5:730346-731197 FORWARD LENGTH=283	SoyBase	E_val: 4.00E-36	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JPK0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPK0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LYX4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 n=1 Tax=Arabidopsis thaliana RepID=Q9LYX4_ARATH	SoyBase	E_val: 2.00E-33	ISS

Expression Patterns of Glyma03g33610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33610

Paralog	Evidence	Comments
Glyma19g36320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g178700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g33610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g33610

Limit To All Plant Sequences

>Glyma03g33610.1   sequence type=CDS   gene model=Glyma03g33610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTATCAGCCAAACCCATTTCGAGTCCGGGTCGCACAGACAAGTTCCCTCCCCCACTCATGAGGTTTCTCAGAAGCAATGCTGCCAGCAGAAGCACCAGAAGGTCCAAATCAAGCCCAATGTTCGTAAGGAAAAAAAACACCACCGCCATCGAAACCCAAACCCAGGAACCCTCTTCCCCCAAGGTCACGTGCATGGGCCAGGTCCGAGTCAAACAAGCCGCCACCACCTCACGTGACTTAGCTCCCCCGCGCTGCCGCTGCCGCTGCTACTGCTGTTGGATCCGAAGCCCCAACAACCACCCCTGCCGCTGCAAACCCCTCTGGCCCAACTGGCCCAGCTTCTTCCGTCGAAAGCCCACCACGCTCAAACATCACTCCGAGCCCGAGCGCAATTTTCACGACCAAGAATCAGAATTACCGTTCCATGAGAGAGTGAATGTCGATAAGGATAGTGATTTTGCTTCCAATTCAAGCACGCCCCCGAGAAACGCTTTGCTTTTAACTCGCTGTAGATCCGCGCCGTACAGATCTTCCTCTTTGGCTAGTAGGTTCTGGAGTTCTCCCGTTAAGGACCAAGAAACGGAGTTTCCAATTCCGAACACGACGGAACAACAACACACTTCCGAGGAACCCCAAACGGAACCCGAATTAGGTTTTCTCAGAGAAAAAATTGCTTCACTCACCGAACCGGAAAAGGTTGAGGAAGTTGAAACAGAAACAGAGTCTGCATCATCACGTCCTACTGTACTCACTAGGTGCAAATCGGAACCGGCGAGAACCGGACACAGACTTCTTGACCCTCTGGTAAATAATACTAGTAATTTGTTGAATAAAAGAAGGTTGGAATTTGATTAA

Predicted protein sequences of Glyma03g33610

Limit To All Plant Sequences

>Glyma03g33610.1   sequence type=predicted peptide   gene model=Glyma03g33610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLSAKPISSPGRTDKFPPPLMRFLRSNAASRSTRRSKSSPMFVRKKNTTAIETQTQEPSSPKVTCMGQVRVKQAATTSRDLAPPRCRCRCYCCWIRSPNNHPCRCKPLWPNWPSFFRRKPTTLKHHSEPERNFHDQESELPFHERVNVDKDSDFASNSSTPPRNALLLTRCRSAPYRSSSLASRFWSSPVKDQETEFPIPNTTEQQHTSEEPQTEPELGFLREKIASLTEPEKVEEVETETESASSRPTVLTRCKSEPARTGHRLLDPLVNNTSNLLNKRRLEFD*

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