Glyma03g33580 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g33580

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41108791
stop:	41112430
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g33580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53360	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:19784502-19786808 FORWARD LENGTH=768	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF80	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7L1R8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7L1R8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336F88	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336F88 related cluster n=1 Tax=unknown RepID=UPI0002336F88	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g33580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33580

Paralog	Evidence	Comments
Glyma19g36290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g178400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g33580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g33580

Limit To All Plant Sequences

>Glyma03g33580.2   sequence type=transcript   gene model=Glyma03g33580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCTTATTACTCTGTCTGTATACAGAGACTAGAGATTTTTGTTTCGAGGTACGTTATTTTCCATTATACTGTTGTGTTGTAGGAAAATTAAACTTGGAAGATGAATTTTCTCTATGTTTTTTTTATTAAACTATTTTCATCTGTGTTAGTATCACTTGTGCGCATACACGCTTTTCCAAACTCCTTGATTTCGAATTTGAGAATGCAATTTTTTTGCATACCAACTGTTCGAAAAATGGTCACCAAGAGCTGCTAGGAAGATATTTTTGCAGAGTCTATTACATGGCTCATTTCCATCTTTCACGCATTAACATTTGAGAAGTTTATAGTTTGGTTAGTTGCAGAAATTTAACGAGGGAGAATCTCTCCACTTGGTTTTAGTGATGGATTGGACGAAATCCCATGTCAGTTTGTCTGTCTAATCAAACAACATAGGTAACATCTTTGACTATCGGTGTGGCTTGACTCATGGATGATGTTCTCGGATTCATGGATTCAATGAATTTCTGACAAGAGAACATGAAACTCCAGTGGCTGGCTGGCTGGTGGCTTTTACCTCCTTAATTCATATAGATAGAGATGGTAGATCAAGAAGGAGGTTTTAGCCAAGGGTACTACTTCATAATTATGCAGTTTCTTAAGTTACAGTTAATACCTGGCTTTACAGAAGTACTCTCAATGGGTTCATCCAATTATTGATTTTTTGTTTCATTAATCAAAAACACTCATTTGTGACCACTTTACTGTCCTGACACCATATCACCCAACAAGGTTCTCAACTATAACAAGAGTTTTACTTCACTTGCTTTCTAAATATTCCTTGTCCATGACCATTCAAAGCCAAATTCGATGTATATATAATTGTGTAAGACCTATTTTACCAACAAGAATCGTCTCCTGTCTCAGTAGAGAGTTATCAACCAACAGTTACATCAACTTGATGTGCAAGCAACGGCATTACAGAGAAGCGCTTGATACATTCAATTTCCATCCTAAGAATTCAAGTATCCAGCTAGAATCAAGCACCTATGGGAATTTAATCTTGGCCTGCACCAGCATTAGATCTCTTAAATATGGCAAAAAAATTCATGATCATATTTTAAAGTCCAACTGTCAACCAGACCTTGTTCTCCAAAATCATATTCTTAATATGTATGGAAAATGTGGTTCTTTGAAAGATGCTAGAAAAGCTTTTGACACAATGCAGCTGCGAAATGTGGTCTCTTGGACTATAATGATCTCTGGATACTCGCAGAATGGTCAAGAGAATGATGCCATCATTATGTACATTCAAATGCTGCAATCAGGTTATTTCCCAGATCCGTTAACCTTTGGAAGCATAATTAAGGCTTGCTGCATTGCGGGGGATATAGATTTAGGTAGGCAGCTGCATGGTCATGTCATTAAATCAGGGTATGATCATCACTTGATTGCACAAAATGCTCTTATTTCAATGTATACAAGGTTTGGACAAATTGTACATGCATCAGATGTGTTTACTATGATTTCTACAAAGGATTTAATATCCTGGGCTTCCATGATCACGGGGTTCACCCAACTTGGTTATGAGATAGAAGCTTTATATCTTTTCAGAGATATGTTCAGGCAAGGTTTTTATCAACCAAATGAGTTTATATTTGGCAGTGTATTCAGTGCTTGCAGAAGCCTTCTCGAACCAGAATTTGGAAGGCAAATACATGGAATGTGTGCTAAATTTGGTTTAGGGAGGAATGTTTTTGCTGGGTGCTCCCTCTGTGACATGTATGCAAAATTTGGATTCTTACCTTCAGCAATAAGGGCCTTTTATCAAATTGAAAGCCCTGATTTAGTGTCATGGAATGCAATTATTGCAGCATTTTCTGACAGTGGTGATGTTAATGAAGCCATATATTTTTTTTGTCAGATGATGCATACGGGATTGATGCCAGATGGCATTACTTTTCTCTCCTTACTTTGTGCTTGTGGGAGCCCAGTGACAATCAACCAAGGCACACAAATACATTCTTATATTATCAAAATAGGTTTGGATAAGGAAGCAGCTGTATGTAACTCTTTGCTGACCATGTACACAAAGTGTTCAAACCTACATGATGCATTCAATGTTTTCAAAGATGTAAGTGAAAATGCCAATTTAGTTTCTTGGAATGCAATTCTATCAGCATGCTTGCAGCACAAACAGGCAGGAGAGGTTTTCAGACTATTTAAGCTAATGCTTTTTTCTGAAAATAAGCCTGACAATATCACCATTACTACCATATTAGGAACTTGTGCAGAATTGGCATCTCTAGAAGTTGGCAATCAAGTCCATTGCTTTAGTGTTAAAAGTGGACTGGTAGTTGATGTTTCTGTCAGCAATAGATTGATCGACATGTATGCAAAGTGTGGTTCACTTAAACATGCTCGAGATGTTTTTGGTTCAACCCAGAACCCAGATATTGTCTCATGGAGTAGTTTAATTGTTGGTTATGCTCAGTTTGGACTTGGGCATGAAGCTCTTAATCTCTTTAGAATGATGAAGAATCTTGGTGTCCAGCCTAATGAGGTCACATATCTGGGGGTTCTCAGTGCATGCAGTCACATTGGATTGGTGGAGGAAGGCTGGCACTTTTATAACACCATGGAAATAGAACTAGGGATTCCACCAACAAGAGAGCATGTTTCTTGCATGGTTGATTTGCTTGCTCGTGCTGGATGCTTGTATGAAGCTGAGAATTTTATTAAGAAGATGGGTTTTAACCCAGACATTACTATGTGGAAAACTCTACTTGCTTCTTGTAAAACTCATGGTAATGTTGACATTGCTGAGCGGGCTGCAGAGAATATACTTAAACTTGATCCTTCCAATTCTGCTGCTCTGGTGCTACTTTCTAATATACATGCTTCTGTGGGCAATTGGAAAGAAGTTGCCCGATTAAGGAACTTGATGAAACAAATGGGTGTACAGAAGGTTCCTGGTCAAAGTTGGATAGCAGTTAAGGATCAGATCCATGTGTTCTTCTCAGAAGATAATTCCCATCAACAGAGGGGCGACATTTACACAATGCTTGAAGATTTGTGGTTGCAGATGCTGGATGATGGTTATGATCCTTGTCAGAGTGAGGAGAAAAGTGTGTCTATGTGCTAATGAGCTTTGTATTGGAGGCGTAAACAGCAGAATAATGCATTTAATACTGTATTGAATGTTACTTACCCTAAGGCAAGGTAACCTCTAATCTCTC

Coding sequences of Glyma03g33580

Limit To All Plant Sequences

>Glyma03g33580.1   sequence type=CDS   gene model=Glyma03g33580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCATTCAAAGCCAAATTCGATGTATATATAATTGTGTAAGACCTATTTTACCAACAAGAATCGTCTCCTGTCTCAGTAGAGAGTTATCAACCAACAGTTACATCAACTTGATGTGCAAGCAACGGCATTACAGAGAAGCGCTTGATACATTCAATTTCCATCCTAAGAATTCAAGTATCCAGCTAGAATCAAGCACCTATGGGAATTTAATCTTGGCCTGCACCAGCATTAGATCTCTTAAATATGGCAAAAAAATTCATGATCATATTTTAAAGTCCAACTGTCAACCAGACCTTGTTCTCCAAAATCATATTCTTAATATGTATGGAAAATGTGGTTCTTTGAAAGATGCTAGAAAAGCTTTTGACACAATGCAGCTGCGAAATGTGGTCTCTTGGACTATAATGATCTCTGGATACTCGCAGAATGGTCAAGAGAATGATGCCATCATTATGTACATTCAAATGCTGCAATCAGGTTATTTCCCAGATCCGTTAACCTTTGGAAGCATAATTAAGGCTTGCTGCATTGCGGGGGATATAGATTTAGGTAGGCAGCTGCATGGTCATGTCATTAAATCAGGGTATGATCATCACTTGATTGCACAAAATGCTCTTATTTCAATGTATACAAGGTTTGGACAAATTGTACATGCATCAGATGTGTTTACTATGATTTCTACAAAGGATTTAATATCCTGGGCTTCCATGATCACGGGGTTCACCCAACTTGGTTATGAGATAGAAGCTTTATATCTTTTCAGAGATATGTTCAGGCAAGGTTTTTATCAACCAAATGAGTTTATATTTGGCAGTGTATTCAGTGCTTGCAGAAGCCTTCTCGAACCAGAATTTGGAAGGCAAATACATGGAATGTGTGCTAAATTTGGTTTAGGGAGGAATGTTTTTGCTGGGTGCTCCCTCTGTGACATGTATGCAAAATTTGGATTCTTACCTTCAGCAATAAGGGCCTTTTATCAAATTGAAAGCCCTGATTTAGTGTCATGGAATGCAATTATTGCAGCATTTTCTGACAGTGGTGATGTTAATGAAGCCATATATTTTTTTTGTCAGATGATGCATACGGGATTGATGCCAGATGGCATTACTTTTCTCTCCTTACTTTGTGCTTGTGGGAGCCCAGTGACAATCAACCAAGGCACACAAATACATTCTTATATTATCAAAATAGGTTTGGATAAGGAAGCAGCTGTATGTAACTCTTTGCTGACCATGTACACAAAGTGTTCAAACCTACATGATGCATTCAATGTTTTCAAAGATGTAAGTGAAAATGCCAATTTAGTTTCTTGGAATGCAATTCTATCAGCATGCTTGCAGCACAAACAGGCAGGAGAGGTTTTCAGACTATTTAAGCTAATGCTTTTTTCTGAAAATAAGCCTGACAATATCACCATTACTACCATATTAGGAACTTGTGCAGAATTGGCATCTCTAGAAGTTGGCAATCAAGTCCATTGCTTTAGTGTTAAAAGTGGACTGGTAGTTGATGTTTCTGTCAGCAATAGATTGATCGACATGTATGCAAAGTGTGGTTCACTTAAACATGCTCGAGATGTTTTTGGTTCAACCCAGAACCCAGATATTGTCTCATGGAGTAGTTTAATTGTTGGTTATGCTCAGTTTGGACTTGGGCATGAAGCTCTTAATCTCTTTAGAATGATGAAGAATCTTGGTGTCCAGCCTAATGAGGTCACATATCTGGGGGTTCTCAGTGCATGCAGTCACATTGGATTGGTGGAGGAAGGCTGGCACTTTTATAACACCATGGAAATAGAACTAGGGATTCCACCAACAAGAGAGCATGTTTCTTGCATGGTTGATTTGCTTGCTCGTGCTGGATGCTTGTATGAAGCTGAGAATTTTATTAAGAAGATGGGTTTTAACCCAGACATTACTATGTGGAAAACTCTACTTGCTTCTTGTAAAACTCATGGTAATGTTGACATTGCTGAGCGGGCTGCAGAGAATATACTTAAACTTGATCCTTCCAATTCTGCTGCTCTGGTGCTACTTTCTAATATACATGCTTCTGTGGGCAATTGGAAAGAAGTTGCCCGATTAAGGAACTTGATGAAACAAATGGGTGTACAGAAGGTTCCTGGTCAAAGTTGGATAGCAGTTAAGGATCAGATCCATGTGTTCTTCTCAGAAGATAATTCCCATCAACAGAGGGGCGACATTTACACAATGCTTGAAGATTTGTGGTTGCAGATGCTGGATGATGGTTATGATCCTTGTCAGAGGTTAGACATTAGCATTTGGTAG

>Glyma03g33580.2   sequence type=CDS   gene model=Glyma03g33580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCATTCAAAGCCAAATTCGATGTATATATAATTGTGTAAGACCTATTTTACCAACAAGAATCGTCTCCTGTCTCAGTAGAGAGTTATCAACCAACAGTTACATCAACTTGATGTGCAAGCAACGGCATTACAGAGAAGCGCTTGATACATTCAATTTCCATCCTAAGAATTCAAGTATCCAGCTAGAATCAAGCACCTATGGGAATTTAATCTTGGCCTGCACCAGCATTAGATCTCTTAAATATGGCAAAAAAATTCATGATCATATTTTAAAGTCCAACTGTCAACCAGACCTTGTTCTCCAAAATCATATTCTTAATATGTATGGAAAATGTGGTTCTTTGAAAGATGCTAGAAAAGCTTTTGACACAATGCAGCTGCGAAATGTGGTCTCTTGGACTATAATGATCTCTGGATACTCGCAGAATGGTCAAGAGAATGATGCCATCATTATGTACATTCAAATGCTGCAATCAGGTTATTTCCCAGATCCGTTAACCTTTGGAAGCATAATTAAGGCTTGCTGCATTGCGGGGGATATAGATTTAGGTAGGCAGCTGCATGGTCATGTCATTAAATCAGGGTATGATCATCACTTGATTGCACAAAATGCTCTTATTTCAATGTATACAAGGTTTGGACAAATTGTACATGCATCAGATGTGTTTACTATGATTTCTACAAAGGATTTAATATCCTGGGCTTCCATGATCACGGGGTTCACCCAACTTGGTTATGAGATAGAAGCTTTATATCTTTTCAGAGATATGTTCAGGCAAGGTTTTTATCAACCAAATGAGTTTATATTTGGCAGTGTATTCAGTGCTTGCAGAAGCCTTCTCGAACCAGAATTTGGAAGGCAAATACATGGAATGTGTGCTAAATTTGGTTTAGGGAGGAATGTTTTTGCTGGGTGCTCCCTCTGTGACATGTATGCAAAATTTGGATTCTTACCTTCAGCAATAAGGGCCTTTTATCAAATTGAAAGCCCTGATTTAGTGTCATGGAATGCAATTATTGCAGCATTTTCTGACAGTGGTGATGTTAATGAAGCCATATATTTTTTTTGTCAGATGATGCATACGGGATTGATGCCAGATGGCATTACTTTTCTCTCCTTACTTTGTGCTTGTGGGAGCCCAGTGACAATCAACCAAGGCACACAAATACATTCTTATATTATCAAAATAGGTTTGGATAAGGAAGCAGCTGTATGTAACTCTTTGCTGACCATGTACACAAAGTGTTCAAACCTACATGATGCATTCAATGTTTTCAAAGATGTAAGTGAAAATGCCAATTTAGTTTCTTGGAATGCAATTCTATCAGCATGCTTGCAGCACAAACAGGCAGGAGAGGTTTTCAGACTATTTAAGCTAATGCTTTTTTCTGAAAATAAGCCTGACAATATCACCATTACTACCATATTAGGAACTTGTGCAGAATTGGCATCTCTAGAAGTTGGCAATCAAGTCCATTGCTTTAGTGTTAAAAGTGGACTGGTAGTTGATGTTTCTGTCAGCAATAGATTGATCGACATGTATGCAAAGTGTGGTTCACTTAAACATGCTCGAGATGTTTTTGGTTCAACCCAGAACCCAGATATTGTCTCATGGAGTAGTTTAATTGTTGGTTATGCTCAGTTTGGACTTGGGCATGAAGCTCTTAATCTCTTTAGAATGATGAAGAATCTTGGTGTCCAGCCTAATGAGGTCACATATCTGGGGGTTCTCAGTGCATGCAGTCACATTGGATTGGTGGAGGAAGGCTGGCACTTTTATAACACCATGGAAATAGAACTAGGGATTCCACCAACAAGAGAGCATGTTTCTTGCATGGTTGATTTGCTTGCTCGTGCTGGATGCTTGTATGAAGCTGAGAATTTTATTAAGAAGATGGGTTTTAACCCAGACATTACTATGTGGAAAACTCTACTTGCTTCTTGTAAAACTCATGGTAATGTTGACATTGCTGAGCGGGCTGCAGAGAATATACTTAAACTTGATCCTTCCAATTCTGCTGCTCTGGTGCTACTTTCTAATATACATGCTTCTGTGGGCAATTGGAAAGAAGTTGCCCGATTAAGGAACTTGATGAAACAAATGGGTGTACAGAAGGTTCCTGGTCAAAGTTGGATAGCAGTTAAGGATCAGATCCATGTGTTCTTCTCAGAAGATAATTCCCATCAACAGAGGGGCGACATTTACACAATGCTTGAAGATTTGTGGTTGCAGATGCTGGATGATGGTTATGATCCTTGTCAGAGTGAGGAGAAAAGTGTGTCTATGTGCTAA

Predicted protein sequences of Glyma03g33580

Limit To All Plant Sequences

>Glyma03g33580.1   sequence type=predicted peptide   gene model=Glyma03g33580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIQSQIRCIYNCVRPILPTRIVSCLSRELSTNSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASVGNWKEVARLRNLMKQMGVQKVPGQSWIAVKDQIHVFFSEDNSHQQRGDIYTMLEDLWLQMLDDGYDPCQRLDISIW*

>Glyma03g33580.2   sequence type=predicted peptide   gene model=Glyma03g33580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIQSQIRCIYNCVRPILPTRIVSCLSRELSTNSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASVGNWKEVARLRNLMKQMGVQKVPGQSWIAVKDQIHVFFSEDNSHQQRGDIYTMLEDLWLQMLDDGYDPCQSEEKSVSMC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain