Glyma03g33540 - SoyBase

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Report for Sequence Feature Glyma03g33540

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41082424
stop:	41087190
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g33540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37080	AT	Annotation by Michelle Graham. TAIR10: ROP interactive partner 3 \| chr2:15581565-15584057 REVERSE LENGTH=583	SoyBase	E_val: 1.00E-170	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
UniRef100_G7L1R0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Interactor of constitutive active ROPs n=2 Tax=Medicago truncatula RepID=G7L1R0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JPJ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPJ5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g33540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33540

Paralog	Evidence	Comments
Glyma19g36260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g178100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g33540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g33540

Limit To All Plant Sequences

>Glyma03g33540.2   sequence type=transcript   gene model=Glyma03g33540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGAAACGTATTTTTGGTGTTGGCTCCTACTTTCGCCTCTGACACAGAAAATACAATGACACAAACTCGGGAACTGAGCAACATCACATAAACCAAACTCAACTCAACTCAACAACCTCTCACTCACCTTCTATTCTTATGCCTTCCCTTCCCTTCCCTTCTCTTCCCTCCCACACTAGGGTTTACCTCTCTTCACACTTCACACTTCACCCTTCACACTTCACACATTGCCATTTGAACACTATTTGGGAATAGTGGGTCAGGGAGTTTAAAGGAGTGGTCTTTTCGTTTTCCTTTGTATCCTTTACGACTTGGGAGATTATAATATGCAGACACCAAAAGCAAGAGTTGGTGCTTCAGAAGTGCCCCAAAAGAAATCTCCTGCAACTCCTCGAACTGCTCGTCAGTTGAAGACACCAAACTCTGATGCATACTCTGTCTCCTCTCCAAATGCTGCAAAAAAGACTCCGAAAGATAGAAGTCCAAAGGTTATTGAATGCAGGTCACCTCATAGTCCAATATCTGAGAAGAAACGACCTAGTAAGGTCCAGGAATTGGAATCTCAGATTGCTCGGCTTCAAGAAGATCTGAAGAATGCTAAGGATCAACTTAACTCATCTGAGTCATGGAAGAGAAAAGCTCAACAGGAGGCTGAAGAGGCAAAGAAGCAGCTTGTAGACTTGACGAAAGAGCTGCAGGAATCCCATCAACAGCTTTTGGACTTTTCGGCTTCTGAAGAAGTGAGGCTTCAAGAGCTCCGCAAAATTTCTCAGGATCGAGATCGAGAATGGCAATCTGAACTAGAGGCTGTCCAAAAGCAACAGGCAATGGATTCAGCTGCTTTGGCATCTGCCATGAATGAAATACAGAAATTGAAAATTCAACTTGAAAGAGTATGTGGGTCTGAAGCTACTCAGATCAACAGTTCAGAATCAGCTCATGCTGAAATTCAGGAATTGAAGATGGAGCTTGATAAAACTCTCTCTTTGGTAGAAAAGCTAAAAAATGAGGTAGGTGATTGCAAAGAATCTGAATCCAGGGCTTTGGAAGTAGTTGGTAAAATGCAAATGCAATTGGAAACAGCAAATCAGACTGTTGAAACTCTTAGGTCCGATGGGATGAAAGCAGCAGAAGCTTACAAATCTTTAGCTTTTGAGTTGGAGCAATCAAGAACTCAAGCAAAATCATTGGAAGAACTTGAAAATGAGGAAATAAACCAGCTCAAAGCCGAGCTTATCTCTGCAAAAGCTGAAGTGGGGCAGTTGAAGTCCGTATTGGATATTTCGGAGGTAAGATACCAGGAAGAGTATATCCAGAGCACATTACAGATTAGATGTGCTTTTGAACAACTGGAACGCGCAAAGTCAGAATCTAGTCAGAGAGAGGTTGAGTTATATGAGGAATTGAGGAGAGCTAAAGCTGATACTGAGGAGCTAAGGGCAAACCTGATGGACAAGGAATCTCAGTTGCTTAGTTTGTCGGGTGAGAATATGGAGCTCAATTCCAAGATCAATGAAAACCAATCTACTAGAAGGCAATCTGAGCTTGTGATAGAGCTAAAAAAATTGGATGCTGATGTTGAAGAGTTGAAGGAAAATTTATTAGATAGAGAGACAGAACTGCAAAATATAGCAGCTGAAAACAGTATGCTCAAGATGGACATAAAGGAGGAGTTGGAGAAGAATAAAATCACCAATGAAGCCCTTGCTTCAGCTGAAGCAGCAAGGGCGGCAGAGCAAGAGGCTTTGACAAAACTTGGCAGCATAACAGAAGAGGCTGATAAAAGCAACAAAAGAGTGGTTCGGGTGACTGAGCAGTTAGATGCTGCTCAGGCTGCAAATTCAGAGTTGGAAGCCGAACTAAGGAGACTGAAAGTTCAGTCAGATCAGTGGAGAAAGGCGGCCGAAGCAGCCGCCTCTATGCTTTCTGCTGGAAATAATGGGAAATTTGTCGACCGAAACTGCTCACGTGAAAACAGCTTCAATTCTGTTACTGGCAAGATGAATTCACCTTATTTATTAGACACAGATGGAGAGTCACCTAAGAAGAAAAATACAAACATGATGAAGAAGATTGGAGTTTTGTGGAGGAGGAACCATCATTAGATGCGGCACAGGTATTGGTAATCATTGCCTACACTTTGATATCTTGGCTAAAATGGATTTAATTTTATATGGTTGGTTTCATTGTTACGATTTTTCGGTCAAGGTATTTTGTGTTATCAAGTTTCATGAGTCATGAACATTGAAGCAGTTCCTCAGGGAAATTGTGATAAACTCGTGACGGATATTGTGTTGTAGTTAGATATGTTGAACCTACAGTAATGGAGCGGCTTCTTAATGGCGCAGAGAACTAATGTAGACCACTGTATTTGTTTCTAGGAATCAAGTCTGTTTTCTTGTCTCTACATCATTATAGTTTACGAGATTATGGGTGGGAAGGGCAATGTGACCCCAAAAAAAGTGTAGGTTCCCTTGCAATGATGAATTTATTATCCGTCATATTATCATATTCTGCTGCTCAGATTTATCCGTCA

Coding sequences of Glyma03g33540

Limit To All Plant Sequences

>Glyma03g33540.1   sequence type=CDS   gene model=Glyma03g33540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGACACCAAAAGCAAGAGTTGGTGCTTCAGAAGTGCCCCAAAAGAAATCTCCTGCAACTCCTCGAACTGCTCGTCAGTTGAAGACACCAAACTCTGATGCATACTCTGTCTCCTCTCCAAATGCTGCAAAAAAGACTCCGAAAGATAGAAGTCCAAAGGTTATTGAATGCAGGTCACCTCATAGTCCAATATCTGAGAAGAAACGACCTAGTAAGGTCCAGGAATTGGAATCTCAGATTGCTCGGCTTCAAGAAGATCTGAAGAATGCTAAGGATCAACTTAACTCATCTGAGTCATGGAAGAGAAAAGCTCAACAGGAGGCTGAAGAGGCAAAGAAGCAGCTTGTAGACTTGACGAAAGAGCTGCAGGAATCCCATCAACAGCTTTTGGACTTTTCGGCTTCTGAAGAAGTGAGGCTTCAAGAGCTCCGCAAAATTTCTCAGGATCGAGATCGAGAATGGCAATCTGAACTAGAGGCTGTCCAAAAGCAACAGGCAATGGATTCAGCTGCTTTGGCATCTGCCATGAATGAAATACAGAAATTGAAAATTCAACTTGAAAGAGTATGTGGGTCTGAAGCTACTCAGATCAACAGTTCAGAATCAGCTCATGCTGAAATTCAGGAATTGAAGATGGAGCTTGATAAAACTCTCTCTTTGGTAGAAAAGCTAAAAAATGAGGTAGGTGATTGCAAAGAATCTGAATCCAGGGCTTTGGAAGTAGTTGGTAAAATGCAAATGCAATTGGAAACAGCAAATCAGACTGTTGAAACTCTTAGGTCCGATGGGATGAAAGCAGCAGAAGCTTACAAATCTTTAGCTTTTGAGTTGGAGCAATCAAGAACTCAAGCAAAATCATTGGAAGAACTTGTGAGTAAACTTCAGGCTGATTTGCTTAGCAATGCTAACAAAAGTATGTTAGGTCCAACTCCAACCAATGAAAATGAACCTTCTCAGGAAAATGAGGAAATAAACCAGCTCAAAGCCGAGCTTATCTCTGCAAAAGCTGAAGTGGGGCAGTTGAAGTCCGTATTGGATATTTCGGAGGTAAGATACCAGGAAGAGTATATCCAGAGCACATTACAGATTAGATGTGCTTTTGAACAACTGGAACGCGCAAAGTCAGAATCTAGTCAGAGAGAGGTTGAGTTATATGAGGAATTGAGGAGAGCTAAAGCTGATACTGAGGAGCTAAGGGCAAACCTGATGGACAAGGAATCTCAGTTGCTTAGTTTGTCGGGTGAGAATATGGAGCTCAATTCCAAGATCAATGAAAACCAATCTACTAGAAGGCAATCTGAGCTTGTGATAGAGCTAAAAAAATTGGATGCTGATGTTGAAGAGTTGAAGGAAAATTTATTAGATAGAGAGACAGAACTGCAAAATATAGCAGCTGAAAACAGTATGCTCAAGATGGACATAAAGGAGGAGTTGGAGAAGAATAAAATCACCAATGAAGCCCTTGCTTCAGCTGAAGCAGCAAGGGCGGCAGAGCAAGAGGCTTTGACAAAACTTGGCAGCATAACAGAAGAGGCTGATAAAAGCAACAAAAGAGTGGTTCGGGTGACTGAGCAGTTAGATGCTGCTCAGGCTGCAAATTCAGAGTTGGAAGCCGAACTAAGGAGACTGAAAGTTCAGTCAGATCAGTGGAGAAAGGCGGCCGAAGCAGCCGCCTCTATGCTTTCTGCTGGAAATAATGGGAAATTTGTCGACCGAAACTGCTCACGTGAAAACAGCTTCAATTCTGTTACTGGCAAGATGAATTCACCTTATTTATTAGACACAGATGGAGAGTCACCTAAGAAGAAAAATACAAACATGATGAAGAAGATTGGAGTTTTGTGGAGGAGGAACCATCATTAG

>Glyma03g33540.2   sequence type=CDS   gene model=Glyma03g33540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGACACCAAAAGCAAGAGTTGGTGCTTCAGAAGTGCCCCAAAAGAAATCTCCTGCAACTCCTCGAACTGCTCGTCAGTTGAAGACACCAAACTCTGATGCATACTCTGTCTCCTCTCCAAATGCTGCAAAAAAGACTCCGAAAGATAGAAGTCCAAAGGTTATTGAATGCAGGTCACCTCATAGTCCAATATCTGAGAAGAAACGACCTAGTAAGGTCCAGGAATTGGAATCTCAGATTGCTCGGCTTCAAGAAGATCTGAAGAATGCTAAGGATCAACTTAACTCATCTGAGTCATGGAAGAGAAAAGCTCAACAGGAGGCTGAAGAGGCAAAGAAGCAGCTTGTAGACTTGACGAAAGAGCTGCAGGAATCCCATCAACAGCTTTTGGACTTTTCGGCTTCTGAAGAAGTGAGGCTTCAAGAGCTCCGCAAAATTTCTCAGGATCGAGATCGAGAATGGCAATCTGAACTAGAGGCTGTCCAAAAGCAACAGGCAATGGATTCAGCTGCTTTGGCATCTGCCATGAATGAAATACAGAAATTGAAAATTCAACTTGAAAGAGTATGTGGGTCTGAAGCTACTCAGATCAACAGTTCAGAATCAGCTCATGCTGAAATTCAGGAATTGAAGATGGAGCTTGATAAAACTCTCTCTTTGGTAGAAAAGCTAAAAAATGAGGTAGGTGATTGCAAAGAATCTGAATCCAGGGCTTTGGAAGTAGTTGGTAAAATGCAAATGCAATTGGAAACAGCAAATCAGACTGTTGAAACTCTTAGGTCCGATGGGATGAAAGCAGCAGAAGCTTACAAATCTTTAGCTTTTGAGTTGGAGCAATCAAGAACTCAAGCAAAATCATTGGAAGAACTTGAAAATGAGGAAATAAACCAGCTCAAAGCCGAGCTTATCTCTGCAAAAGCTGAAGTGGGGCAGTTGAAGTCCGTATTGGATATTTCGGAGGTAAGATACCAGGAAGAGTATATCCAGAGCACATTACAGATTAGATGTGCTTTTGAACAACTGGAACGCGCAAAGTCAGAATCTAGTCAGAGAGAGGTTGAGTTATATGAGGAATTGAGGAGAGCTAAAGCTGATACTGAGGAGCTAAGGGCAAACCTGATGGACAAGGAATCTCAGTTGCTTAGTTTGTCGGGTGAGAATATGGAGCTCAATTCCAAGATCAATGAAAACCAATCTACTAGAAGGCAATCTGAGCTTGTGATAGAGCTAAAAAAATTGGATGCTGATGTTGAAGAGTTGAAGGAAAATTTATTAGATAGAGAGACAGAACTGCAAAATATAGCAGCTGAAAACAGTATGCTCAAGATGGACATAAAGGAGGAGTTGGAGAAGAATAAAATCACCAATGAAGCCCTTGCTTCAGCTGAAGCAGCAAGGGCGGCAGAGCAAGAGGCTTTGACAAAACTTGGCAGCATAACAGAAGAGGCTGATAAAAGCAACAAAAGAGTGGTTCGGGTGACTGAGCAGTTAGATGCTGCTCAGGCTGCAAATTCAGAGTTGGAAGCCGAACTAAGGAGACTGAAAGTTCAGTCAGATCAGTGGAGAAAGGCGGCCGAAGCAGCCGCCTCTATGCTTTCTGCTGGAAATAATGGGAAATTTGTCGACCGAAACTGCTCACGTGAAAACAGCTTCAATTCTGTTACTGGCAAGATGAATTCACCTTATTTATTAGACACAGATGGAGAGTCACCTAAGAAGAAAAATACAAACATGATGAAGAAGATTGGAGTTTTGTGGAGGAGGAACCATCATTAG

Predicted protein sequences of Glyma03g33540

Limit To All Plant Sequences

>Glyma03g33540.1   sequence type=predicted peptide   gene model=Glyma03g33540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQTPKARVGASEVPQKKSPATPRTARQLKTPNSDAYSVSSPNAAKKTPKDRSPKVIECRSPHSPISEKKRPSKVQELESQIARLQEDLKNAKDQLNSSESWKRKAQQEAEEAKKQLVDLTKELQESHQQLLDFSASEEVRLQELRKISQDRDREWQSELEAVQKQQAMDSAALASAMNEIQKLKIQLERVCGSEATQINSSESAHAEIQELKMELDKTLSLVEKLKNEVGDCKESESRALEVVGKMQMQLETANQTVETLRSDGMKAAEAYKSLAFELEQSRTQAKSLEELVSKLQADLLSNANKSMLGPTPTNENEPSQENEEINQLKAELISAKAEVGQLKSVLDISEVRYQEEYIQSTLQIRCAFEQLERAKSESSQREVELYEELRRAKADTEELRANLMDKESQLLSLSGENMELNSKINENQSTRRQSELVIELKKLDADVEELKENLLDRETELQNIAAENSMLKMDIKEELEKNKITNEALASAEAARAAEQEALTKLGSITEEADKSNKRVVRVTEQLDAAQAANSELEAELRRLKVQSDQWRKAAEAAASMLSAGNNGKFVDRNCSRENSFNSVTGKMNSPYLLDTDGESPKKKNTNMMKKIGVLWRRNHH*

>Glyma03g33540.2   sequence type=predicted peptide   gene model=Glyma03g33540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQTPKARVGASEVPQKKSPATPRTARQLKTPNSDAYSVSSPNAAKKTPKDRSPKVIECRSPHSPISEKKRPSKVQELESQIARLQEDLKNAKDQLNSSESWKRKAQQEAEEAKKQLVDLTKELQESHQQLLDFSASEEVRLQELRKISQDRDREWQSELEAVQKQQAMDSAALASAMNEIQKLKIQLERVCGSEATQINSSESAHAEIQELKMELDKTLSLVEKLKNEVGDCKESESRALEVVGKMQMQLETANQTVETLRSDGMKAAEAYKSLAFELEQSRTQAKSLEELENEEINQLKAELISAKAEVGQLKSVLDISEVRYQEEYIQSTLQIRCAFEQLERAKSESSQREVELYEELRRAKADTEELRANLMDKESQLLSLSGENMELNSKINENQSTRRQSELVIELKKLDADVEELKENLLDRETELQNIAAENSMLKMDIKEELEKNKITNEALASAEAARAAEQEALTKLGSITEEADKSNKRVVRVTEQLDAAQAANSELEAELRRLKVQSDQWRKAAEAAASMLSAGNNGKFVDRNCSRENSFNSVTGKMNSPYLLDTDGESPKKKNTNMMKKIGVLWRRNHH*

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