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Report for Sequence Feature Glyma03g33503

Feature Type:gene_model
Chromosome:Gm03
Start:41065926
stop:41068300
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g33503
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09660AT Annotation by Michelle Graham. TAIR10: minichromosome maintenance 8 | chr3:2961314-2966166 REVERSE LENGTH=777 SoyBaseE_val: 1.00E-63ISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006270GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication initiation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008094GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
PTHR11630Panther DNA REPLICATION LICENSING FACTOR JGI ISS
PTHR11630:SF47Panther DNA REPLICATION LICENSING FACTOR MCM8 JGI ISS
UniRef100_B9SGR4UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA replication licensing factor MCM8, putative n=1 Tax=Ricinus communis RepID=B9SGR4_RICCO SoyBaseE_val: 1.00E-72ISS
UniRef100_UPI000233F5B4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F5B4 related cluster n=1 Tax=unknown RepID=UPI000233F5B4 SoyBaseE_val: 7.00E-111ISS

Expression Patterns of Glyma03g33503
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g33503 not represented in the dataset
Glyma03g33503 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33503
ParalogEvidenceComments
Glyma19g36230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33503 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g177800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g33503
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g33503
>Glyma03g33503.1   sequence type=CDS   gene model=Glyma03g33503   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCATTCGGGTTAATTGATATACTCGGCACTTACTTTCCTCAGCAACTCTTCACCATCGATGACACCTGGCTCAATCTCACTTCTGCTCTTCTTTCCTTCTTCTCTTCACCGCCGGGGCAAAACCTTGTTTCTCAGGTTTTTCTTTCCAAATGGGTGAATGGCGATCTAGAGCATGGTGCAAAGGTAGATATTCGTCTTCATAACTGCCCTGAAACTATGATTGCTCTGAAGAACTTAAAAGCAGCTTATATTGTTTTTGAATGCAGTAAATGTAAACAACCAGTTACACGTATATTTCCTGATGGAAAATATTCTCCACCATCTATATGCAATTTGAATGGCTGCAAGAGCAAATTCTTTATTTCGTTGCGATCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAGCCTGAAGACCACGAAGAAGGACGGGTGCCTCGAACAGTGGAATGTGAACTTACCCAAGATCTTGTCCGCCACTGCATACCTGGAGATGTGGTGACTGTTACTGGAATTATAAGAGGAATTAACACTTACATGGATATTGGAGGAGGGAAAGCAAATCCAAGTTTGTTAGTCAAAGATACCTGA
Predicted protein sequences of Glyma03g33503
>Glyma03g33503.1   sequence type=predicted peptide   gene model=Glyma03g33503   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPFGLIDILGTYFPQQLFTIDDTWLNLTSALLSFFSSPPGQNLVSQVFLSKWVNGDLEHGAKVDIRLHNCPETMIALKNLKAAYIVFECSKCKQPVTRIFPDGKYSPPSICNLNGCKSKFFISLRSTAQTIDFQKIRVQELLKPEDHEEGRVPRTVECELTQDLVRHCIPGDVVTVTGIIRGINTYMDIGGGKANPSLLVKDT*






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