Glyma03g33490 - SoyBase

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Report for Sequence Feature Glyma03g33490

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41059019
stop:	41063451
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g33490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37060	AT	Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit B8 \| chr2:15576336-15577660 FORWARD LENGTH=173	SoyBase	E_val: 2.00E-87	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0869	KOG	CCAAT-binding factor, subunit A (HAP3)	JGI		ISS
PTHR11064	Panther	TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEIN	JGI		ISS
PTHR11064:SF9	Panther	CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A	JGI		ISS
PF00808	PFAM	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	JGI		ISS
UniRef100_G7L1Q2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit B-3 n=1 Tax=Medicago truncatula RepID=G7L1Q2_MEDTR	SoyBase	E_val: 5.00E-112	ISS
UniRef100_UPI00019AA828	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00019AA828 related cluster n=1 Tax=unknown RepID=UPI00019AA828	SoyBase	E_val: 6.00E-125	ISS

Expression Patterns of Glyma03g33490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33490

Paralog	Evidence	Comments
Glyma19g36220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g177700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g33490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g33490

Limit To All Plant Sequences

>Glyma03g33490.2   sequence type=transcript   gene model=Glyma03g33490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTTCTCTAGCTAGGGTTTCATTTTCACCATGTTTTCCTTTCTCAAATTAGGGTTCCGGCGAGCATGGCCGACGGTCCGGCTAGCCCAGGCGGCGGCAGCCACGAGAGCGGCGACCACAGCCCTCGCTCTAACGTGCGCGAGCAGGACAGGTACCTCCCTATCGCTAACATAAGCCGCATCATGAAGAAGGCACTTCCTGCCAACGGTAAAATCGCAAAGGACGCCAAAGAGACCGTTCAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGTTAGTGTGTTTTTTTTTTCTTCTGATTCTTTTCTCCTCCGTTTTTCTTATTTATCATCGCCTGCTTTTAATTTAAAATTCCTTGAATTCTGTAGGGCCTCTGATAAGTGTCAGAGAGAAAAGAGAAAGACTATTAACGGCGATGATTTGCTCTGGGCGATGGCCACTCTCGGTTTCGAGGATTATATGGATCCTCTTAAAATTTACCTCACTAGATACCGAGAGATGGAGGGTGATACGAAGGGCTCTGCCAAGGGTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAGGGTCAACATATGATGGTTCCAATGCAAGGCCCGGAGTAGGTATCAAGTTTATTATTGACCCTCTTGTTGTAACGTATGTTTTCTACGCCAGTTACCAAGTGCTCACGGCATATTGAATGTCTTTTTATGTTATGTGAATACTGACAGGAGATGTTGGTTCTTGTGTCCGTTTTTTTTTTTAAATTAAGGTTTGTATATTATCTTTGGATTCGAATTATTATTTGAAAGTTATTATTATATTGTAAATCCTAGAGCCCTGTTGTCTGAATCCATCAGGCGGCTTGGTAAAGACCGAGATTTTAGGACTGATTGTAAGCATAAATCCGAATATTCTTTTCCTAATTTCTTTGCACAATAATGTATGAAGAAGGCTCGAGCTTCTTTTATATTTGTAGCGTGGTGCACCCGTGTATCAGTGTGGCCCTTTT

Coding sequences of Glyma03g33490

Limit To All Plant Sequences

>Glyma03g33490.1   sequence type=CDS   gene model=Glyma03g33490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGACGGTCCGGCTAGCCCAGGCGGCGGCAGCCACGAGAGCGGCGACCACAGCCCTCGCTCTAACGTGCGCGAGCAGGACAGGTACCTCCCTATCGCTAACATAAGCCGCATCATGAAGAAGGCACTTCCTGCCAACGGTAAAATCGCAAAGGACGCCAAAGAGACCGTTCAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAAAAGAGAAAGACTATTAACGGCGATGATTTGCTCTGGGCGATGGCCACTCTCGGTTTCGAGGATTATATGGATCCTCTTAAAATTTACCTCACTAGATACCGAGAGATGGAGGGTGATACGAAGGGCTCTGCCAAGGGTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAGGGTCAACATATGATGGTTCCAATGCAAGGCCCGGAGTAG

>Glyma03g33490.2   sequence type=CDS   gene model=Glyma03g33490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGTTAGTGTGTTTTTTTTTTCTTCTGATTCTTTTCTCCTCCGTTTTTCTTATTTATCATCGCCTGCTTTTAATTTAAAATTCCTTGAATTCTGTAGGGCCTCTGATAAGTGTCAGAGAGAAAAGAGAAAGACTATTAACGGCGATGATTTGCTCTGGGCGATGGCCACTCTCGGTTTCGAGGATTATATGGATCCTCTTAAAATTTACCTCACTAGATACCGAGAGATGGAGGGTGATACGAAGGGCTCTGCCAAGGGTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAGGGTCAACATATGATGGTTCCAATGCAAGGCCCGGAGTAG

Predicted protein sequences of Glyma03g33490

Limit To All Plant Sequences

>Glyma03g33490.1   sequence type=predicted peptide   gene model=Glyma03g33490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADGPASPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYMDPLKIYLTRYREMEGDTKGSAKGGDSSAKRDVQPSPNAQLAHQGSFSQNVTYPNSQGQHMMVPMQGPE*

>Glyma03g33490.2   sequence type=predicted peptide   gene model=Glyma03g33490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLRVHQLHHQRVSVFFFSSDSFLLRFSYLSSPAFNLKFLEFCRASDKCQREKRKTINGDDLLWAMATLGFEDYMDPLKIYLTRYREMEGDTKGSAKGGDSSAKRDVQPSPNAQLAHQGSFSQNVTYPNSQGQHMMVPMQGPE*

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