Glyma03g33480 - SoyBase

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Report for Sequence Feature Glyma03g33480

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41050048
stop:	41058079
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g33480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37050	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein \| chr2:15569290-15573477 FORWARD LENGTH=933	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF549	Panther		JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_G7L1Q0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7L1Q0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336F85	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336F85 related cluster n=1 Tax=unknown RepID=UPI0002336F85	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g33480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33480

Paralog	Evidence	Comments
Glyma19g36211	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g177600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g33480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g33480

Limit To All Plant Sequences

>Glyma03g33480.2   sequence type=CDS   gene model=Glyma03g33480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGTATCTTACTCTTCTTCTCATCATTCAAGTTCGCACTCTCGCTCTCACTCATACTCCACTCACCTTTTTCCTCTGCTCAGATCATGCAAGGTTTTGTAAGTTTGGACTGTGGAGGTACAGAAAAATTTGCTGATGAAATTGGTCTTCATTGGACTCCTGATGATAAACTTACTTATGGACAAATAAGCACTATATCAGTTGTAAATGAGACAAGGAAGCAATATACAACACTTCGACACTTTCCCGCTGATTCCAGGAAATACTGTTATACTCTTGAAGTTGTTAGCAGGACGAGATACCTATTGAGGGCCAGCTTCTTATACGGGAACTTTGACGATAACAATGTTTATCCAAAATTTGACATTTCTATTGGGCCTACGCATTGGTCTACTATTGTTATATCTGATGCTAATAGCATAGAAATGCGAGAGCTTATATTTTTGGCTTCAAGTCCTACAGTAAGTGTATGCTTATCGAATGCAACAACAGGACAACCATTCATATCTACGCTAGAACTTCGGCAATTCAACGGTTCAGTTTACTATACACAATTTGAGGAACACTTTTATCTTAGTGTCTCTGCAAGGATAAATTTTGGTGCAGAGAGTGATGCTCCAATTAGGTATCCTGATGACCCTTTTGATAGAATTTGGGAGTCAGATTCTGTGAAGAAAGCTAATTATCTTGTTGATGTTGCTGCTGGAACTGAGAAAATTTCTACAACAGTACCAATCGATGTCAACAGAGATGAAATGCCTCCGGTAAAAGTGATGCAAACAGCTGTAGTGGGTACTAATGGATCTCTAACTTACCGGTTGAACTTGGATGGTTTTCCGGGTACTGGTTGGGCATTCACCTATTTTGCAGAGATTGAAGATTTGGATCCCAATGAATCTAGAAAATTCAGGCTAGTACTTCCGGGTCAGCCAGATATTAGCAAGGCTGTTGTAAATATTGAAGAAAATGCTCAAGGGAAATATCGTCTTTATGAACCAGGATTTACCAATATATCTTTACCCTTTGTGCTTTCTTTTAGATTTGGCAAGACATATGATTCTTCTAGGGGACCTCTCCTTAATGCCATGGAGATAAACATGTATTTGGAGAAAAATGATGGTTCTCTAGATGGAGCAACTATTTCCAATATACTTTCACACTACTCTGCAGAAGACTGGGCCCAAGAAGGTGGTGATCCATGTTTGCCTGTTCCATGGTCATGGGTTCGATGTAACTCTGATCCACAACCAAGAATAGTTTCAATATTGTTATCCAATAAAAACTTGACTGGAAATATTCCTATGGATATCACCAAGTTGGTTGGTTTGGTTGAACTATGGCTTGATGGAAATATGTTGACTGGTCCATTTCCAGATTTTACTGGATGCATGGACTTAAAGATCATTCATCTTGAAAACAATCAATTGACAGGCGTGCTCCCAACCTCTTTGACAAACCTTCCTAGCTTGAGAGAACTGTATGTGCAAAATAATATGTTATCAGGAACAATACCATCAGAACTTCTAAGCAAAGATTTGGTTTTGAACTACTCTGGAAACATTAATCTTCACAGAGAAAGCAGAATAAAGGGACACATGTATGTTATTATTGGTTCATCAGTTGGAGCTTCTGTTCTACTTTTGGCTACTATTATATCTTGCTTGTATATGCGTAAAGGGAAGAGAAGATATCATGAGCAAGATCGCATTGATTCTCTCCCTACTCAAAGGCTGGCTTCTTGGAAGAGCGATGATCCTGCAGAAGCTGCTCACTGCTTCAGTTTTCCGGAAATTGAAAATGCTACAAATAACTTTGAGACAAAAATTGGTTCTGGTGGTTTTGGAATTGTATACTATGGCAAGCTAAAAGATGGAAAAGAGATAGCAGTTAAAGTTTTAACCAGTAATTCCTATCAAGGCAAGCGAGAGTTCTCCAACGAGGTTACCCTTCTTTCAAGAATACATCACAGAAATTTGGTACAGCTGCTTGGGTATTGCCGAGATGAAGAGAGTAGTATGCTTGTTTATGAGTTCATGCATAATGGCACTCTCAAGGAACATCTTTATGGCCCATTAGTGCATGGACGGAGTATCAATTGGATTAAGCGCCTAGAGATTGCAGAAGATGCTGCCAAAGGAATTGAATATCTTCATACAGGTTGCATTCCTGTCGTTATCCATAGAGACTTAAAAAGCAGCAATATTCTTCTCGACAAGCACATGAGAGCCAAGGTTTCAGATTTTGGTCTTTCAAAACTTGCTGTTGATGGAGTTTCCCATGTTTCAAGCATAGTTCGGGGGACAGTAGGATATTTGGATCCTGAGTACTATATTTCCCAGCAGCTGACTGACAAGAGTGATGTTTATAGTTTTGGTGTAATTCTTCTTGAACTCATATCTGGTCAAGAAGCAATATCGAATGAAAGCTTTGGTGTAAATTGCCGAAACATAGTCCAATGGGCAAAATTACACATTGAGAGTGGAGATATACAGGGTATTATCGACCCCTTGCTGCGGAATGACTATGACCTTCAATCGATGTGGAAAATAGCAGAGAAAGCATTGATGTGTGTTCAGCCCCACGGACATATGCGGCCAACGATTTCAGAAGTTATAAAGGAGATCCAAGATGCAATATCTATTGAGAGACAGGCAGAAGCATTAAGAGAAGGCAATTCAGATGACATGTCAAAACATTCTTTTCATTCTTCCATGAACATGGGGTCAATGGATCTAGGTGGAGCTGAGAGTTACCTGTCAATTGATGAATCAATTGCACAGCCCACAGCAAGATAG

Predicted protein sequences of Glyma03g33480

Limit To All Plant Sequences

>Glyma03g33480.2   sequence type=predicted peptide   gene model=Glyma03g33480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESILLFFSSFKFALSLSLILHSPFSSAQIMQGFVSLDCGGTEKFADEIGLHWTPDDKLTYGQISTISVVNETRKQYTTLRHFPADSRKYCYTLEVVSRTRYLLRASFLYGNFDDNNVYPKFDISIGPTHWSTIVISDANSIEMRELIFLASSPTVSVCLSNATTGQPFISTLELRQFNGSVYYTQFEEHFYLSVSARINFGAESDAPIRYPDDPFDRIWESDSVKKANYLVDVAAGTEKISTTVPIDVNRDEMPPVKVMQTAVVGTNGSLTYRLNLDGFPGTGWAFTYFAEIEDLDPNESRKFRLVLPGQPDISKAVVNIEENAQGKYRLYEPGFTNISLPFVLSFRFGKTYDSSRGPLLNAMEINMYLEKNDGSLDGATISNILSHYSAEDWAQEGGDPCLPVPWSWVRCNSDPQPRIVSILLSNKNLTGNIPMDITKLVGLVELWLDGNMLTGPFPDFTGCMDLKIIHLENNQLTGVLPTSLTNLPSLRELYVQNNMLSGTIPSELLSKDLVLNYSGNINLHRESRIKGHMYVIIGSSVGASVLLLATIISCLYMRKGKRRYHEQDRIDSLPTQRLASWKSDDPAEAAHCFSFPEIENATNNFETKIGSGGFGIVYYGKLKDGKEIAVKVLTSNSYQGKREFSNEVTLLSRIHHRNLVQLLGYCRDEESSMLVYEFMHNGTLKEHLYGPLVHGRSINWIKRLEIAEDAAKGIEYLHTGCIPVVIHRDLKSSNILLDKHMRAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNESFGVNCRNIVQWAKLHIESGDIQGIIDPLLRNDYDLQSMWKIAEKALMCVQPHGHMRPTISEVIKEIQDAISIERQAEALREGNSDDMSKHSFHSSMNMGSMDLGGAESYLSIDESIAQPTAR*

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