Glyma03g33376 - SoyBase

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Report for Sequence Feature Glyma03g33376

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40963184
stop:	40972913
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g33376

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37260	AT	Annotation by Michelle Graham. TAIR10: WRKY family transcription factor family protein \| chr2:15645277-15646792 FORWARD LENGTH=429	SoyBase	E_val: 2.00E-104	ISS
GO:0001708	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell fate specification	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009957	GO-bp	Annotation by Michelle Graham. GO Biological Process: epidermal cell fate specification	SoyBase	N/A	ISS
GO:0010214	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed coat development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7L1N8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7L1N8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336F80	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336F80 related cluster n=1 Tax=unknown RepID=UPI0002336F80	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g33376

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g33376 not represented in the dataset	Glyma03g33376 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33376

Paralog	Evidence	Comments
Glyma19g36100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33376 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g176600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g33376

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g33376

Limit To All Plant Sequences

>Glyma03g33376.2   sequence type=transcript   gene model=Glyma03g33376   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGAATCTTATATGATGCGAGGACACTAACACGACATCGTTCTGGTATTAATTTCTCTCTCCATACGTAGCGAATGGTCAAAGAGGACACTGAGATAGTTAGTTGTCCGTACATTTTTGGAGGTTGGCACCCACTGCGAACCACCAATCCCAAGATTCATACTTCCCAATAACCATGTAATGTGGAGTTGATCTGTATTCACCTTTTACTATTTTTATCAAATAATAGTTTTAATCATTGACTGTAATGTGGAGTTTGTATTATTATTAAGAACTAGAGAGCAAGTGTGGTTATTTTTTAGAAAGGGAACATTATCGTTTAGATTCAGAAATCTAATTTGGAATCAAAGCACTCCCTTCTATCTCCCTCTTTTCCTCTCTGTCTGGTTTGCATTAGTATACATACATATAAATATTCATGTATTTGTATAAGGTCAATCCCCAGAAGAAGCTGAAGGTCCTTTTTTTTCTGTTGGTTTCTTTGGTTGGATCTAGAGAAGACAATCTTAGTTGTGAAACTCAGGAGAGGTTAAACTCAGTTTTCATACACTCAGCTGGGAAATGAAAATTAACTGTGAAGCCAACCAGCTGCCACTTTTTAGCATGTTGCCACTTCTCGGATTTCTGAAACACATGTAAAGGGAGCACACTTTTGCACACATTGAAGATGGATATCAAGGAAGCACAAAGGGTGGTCATTTCCAAACCAGTTGCTTCAAGGCCAACTTGTTCTACTTTCAAATCTTTCTCAGAGCTCCTAGCAGGTGCAATCAATGTTTCTCCCGCTATTGAATCTTCTCCAACTACAGTTTCTGCCATTAGACCAAAGACAGTGAGGTTCAAGCCAGCAATGAATCAACCCCCTGCTGGGTTTGTTTCTTCTCAGGCTGATACTTTTGGAGCTGCACTCGATAATTCTTCTGACATGAGTCCTAAACTTGACACCAAACAGTCCCTCATATACAAGCCAACAGCAAAACTCGTGTCAAAGACAACTGTGTCTCTTTTGGCAAATATGGGAAATTGCAGTACTAACACGAGCTCGAATCTCGATCAGAGTATTACCCCGCAAACAGAAACAAATTATCAGAGCAGTGAACCTAGTAAGATGGTGCAGCAGAACATAGAGGAGGACCAAAAAGCTTTAACATCCTCAGTGAATTGTGATCGACCTTCTTATGATGGATACAATTGGAGGAAATATGGTCAGAAGCAAGTGAAAGGGAGCGAGTACCCGCGAAGTTATTACAAGTGCACACATCCTAATTGTCCAGTGAAAAAGAAGGTTGAAAGATCATTTGATGGGAATATTGCAGAAATTGTTTATAAAGGTGAACACAACCATTCGAAGCCACAGCTTCATAAGCGAAACTCAGCAGCAGGGACACAAGGATCAGGGGTTATGTCTGATGGAATGGTTCAAGATATGTGGAGTAATAGTCACAGTGAGAGGAACGAAGGCAATGAAGTTAGAATTGAGAACACAGGATTGTCTATGCATTCAGATTATTATGTCAAAGTTCCACAGCCTAATGATTCTTCATTAAATATTGGTGCAACTAATGCTGGTGGAGGAAGCATGGAAAACTCTTGTGGTCTAAGTGGGGAATATGAGGAAGGAAGCAAGGGATTTGAGGCACAGGAAGATGAACACAGAAGTAAAAGAAGGAAAAATGAGAATCAATCCAATGAAGCAGCATTATCAGAGGAAGGTTTAGTAGAGCCGCGGATTGTGATGCAAAGTTTTACGGATTCTGAAGTTCTTGGAGATGGCTTTCGCTGGAGGAAATATGGGCAGAAGGTGGTGAAAGGCAATCCATACCCCAGAAGTTACTTTAGATGTACTAATATCATGTGTAACGTTCGCAAACACGTGGAGAGAGCAATAGATGACCCGAGATCATTTGTGACTACATATGAGGGAAAGCACAATCATGAGATGCCACTCAAGAACACAGGAACTGTAGCATCTGAAAGAGATTCACAGGCTTCTCTTAGTAAAGATAAACCATGATTGACACTTCAATTAGTTAACAAGTATGATTCAATAGCATTGGCAGACATCTGAAATAATTCAGAGGATGCATTCCTTTTATATCCTATAGTATGCTCAGAATAATTGAAGTTGATCAGAAAGATCAAGACATTGACAATTTCAAATGCAGTACCTACTTAGACTAGGATATTTGTTGATAATAACCGTATTGGTGCTGATAAATTGTATTATATATGGAATCAAGGGCACTGGCTTAGAGGACTGCCCTTCAATAACTTTCTATCTCTGCTAGCTGCCTTTGTATACAAAATCGGTATATTCTATTCTATATCATCATATATGCATTAATCTGGAGTATTATATATCATATGCTAATAGTTTTTATTGTAAATCACTGGCATCGCCAGAAAGAACCCCAAAAGACCTTTATACAGTAATAGCTAATGACATAATTTTGTTTCT

Coding sequences of Glyma03g33376

Limit To All Plant Sequences

>Glyma03g33376.1   sequence type=CDS   gene model=Glyma03g33376   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATCAAGGAAGCACAAAGGGTGGTCATTTCCAAACCAGTTGCTTCAAGGCCAACTTGTTCTACTTTCAAATCTTTCTCAGAGCTCCTAGCAGGTGCAATCAATGTTTCTCCCGCTATTGAATCTTCTCCAACTACAGTTTCTGCCATTAGACCAAAGACAGTGAGGTTCAAGCCAGCAATGAATCAACCCCCTGCTGGGTTTGTTTCTTCTCAGGCTGATACTTTTGGAGCTGCACTCGATAATTCTTCTGACATGAGTCCTAAACTTGACACCAAACAGTCCCTCATATACAAGCCAACAGCAAAACTCGTGTCAAAGACAACTGTGTCTCTTTTGGCAAATATGGGAAATTGCAGTACTAACACGAGCTCGAATCTCGATCAGAGTATTACCCCGCAAACAGAAACAAATTATCAGAGCAGTGAACCTAGTAAGATGGTGCAGCAGAACATAGAGGAGGACCAAAAAGCTTTAACATCCTCAGTGAATTGTGATCGACCTTCTTATGATGGATACAATTGGAGGAAATATGGTCAGAAGCAAGTGAAAGGGAGCGAGTACCCGCGAAGTTATTACAAGTGCACACATCCTAATTGTCCAGTGAAAAAGAAGGTTGAAAGATCATTTGATGGGAATATTGCAGAAATTGTTTATAAAGGTGAACACAACCATTCGAAGCCACAGCTTCATAAGCGAAACTCAGCAGCAGGGACACAAGGATCAGGGGTTATGTCTGATGGAATGGTTCAAGATATGTGGAGTAATAGTCACAGTGAGAGGAACGAAGGCAATGAAGTTAGAATTGAGAACACAGGATTGTCTATGCATTCAGATTATTATGTCAAAGTTCCACAGCCTAATGATTCTTCATTAAATATTGGTGCAACTAATGCTGGTGGAGGAAGCATGGAAAACTCTTGTGGTCTAAGTGGGGAATATGAGGAAGGAAGCAAGGGATTTGAGGCACAGGAAGATGAACACAGAAGTAAAAGAAGGAAAAATGAGAATCAATCCAATGAAGCAGCATTATCAGAGGAAGGTTTAGTAGAGCCGCGGATTGTGATGCAAAGTTTTACGGATTCTGAAGTTCTTGGAGATGGCTTTCGCTGGAGGAAATATGGGCAGAAGGTGGTGAAAGGCAATCCATACCCCAGAAGTTACTTTAGATGTACTAATATCATGTGTAACGTTCGCAAACACGTGGAGAGAGCAATAGATGACCCGAGATCATTTGTGACTACATATGAGGGAAAGCACAATCATGAGATGCCACTCAAGAACACAGGAACTGTAGCATCTGAAAGAGATTCACAGGCTTCTCTTAGTAAAGATAAACCATGA

>Glyma03g33376.2   sequence type=CDS   gene model=Glyma03g33376   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATCAAGGAAGCACAAAGGGTGGTCATTTCCAAACCAGTTGCTTCAAGGCCAACTTGTTCTACTTTCAAATCTTTCTCAGAGCTCCTAGCAGGTGCAATCAATGTTTCTCCCGCTATTGAATCTTCTCCAACTACAGTTTCTGCCATTAGACCAAAGACAGTGAGGTTCAAGCCAGCAATGAATCAACCCCCTGCTGGGTTTGTTTCTTCTCAGGCTGATACTTTTGGAGCTGCACTCGATAATTCTTCTGACATGAGTCCTAAACTTGACACCAAACAGTCCCTCATATACAAGCCAACAGCAAAACTCGTGTCAAAGACAACTGTGTCTCTTTTGGCAAATATGGGAAATTGCAGTACTAACACGAGCTCGAATCTCGATCAGAGTATTACCCCGCAAACAGAAACAAATTATCAGAGCAGTGAACCTAGTAAGATGGTGCAGCAGAACATAGAGGAGGACCAAAAAGCTTTAACATCCTCAGTGAATTGTGATCGACCTTCTTATGATGGATACAATTGGAGGAAATATGGTCAGAAGCAAGTGAAAGGGAGCGAGTACCCGCGAAGTTATTACAAGTGCACACATCCTAATTGTCCAGTGAAAAAGAAGGTTGAAAGATCATTTGATGGGAATATTGCAGAAATTGTTTATAAAGGTGAACACAACCATTCGAAGCCACAGCTTCATAAGCGAAACTCAGCAGCAGGGACACAAGGATCAGGGGTTATGTCTGATGGAATGGTTCAAGATATGTGGAGTAATAGTCACAGTGAGAGGAACGAAGGCAATGAAGTTAGAATTGAGAACACAGGATTGTCTATGCATTCAGATTATTATGTCAAAGTTCCACAGCCTAATGATTCTTCATTAAATATTGGTGCAACTAATGCTGGTGGAGGAAGCATGGAAAACTCTTGTGGTCTAAGTGGGGAATATGAGGAAGGAAGCAAGGGATTTGAGGCACAGGAAGATGAACACAGAAGTAAAAGAAGGAAAAATGAGAATCAATCCAATGAAGCAGCATTATCAGAGGAAGGTTTAGTAGAGCCGCGGATTGTGATGCAAAGTTTTACGGATTCTGAAGTTCTTGGAGATGGCTTTCGCTGGAGGAAATATGGGCAGAAGGTGGTGAAAGGCAATCCATACCCCAGAAGTTACTTTAGATGTACTAATATCATGTGTAACGTTCGCAAACACGTGGAGAGAGCAATAGATGACCCGAGATCATTTGTGACTACATATGAGGGAAAGCACAATCATGAGATGCCACTCAAGAACACAGGAACTGTAGCATCTGAAAGAGATTCACAGGCTTCTCTTAGTAAAGATAAACCATGA

Predicted protein sequences of Glyma03g33376

Limit To All Plant Sequences

>Glyma03g33376.1   sequence type=predicted peptide   gene model=Glyma03g33376   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIKEAQRVVISKPVASRPTCSTFKSFSELLAGAINVSPAIESSPTTVSAIRPKTVRFKPAMNQPPAGFVSSQADTFGAALDNSSDMSPKLDTKQSLIYKPTAKLVSKTTVSLLANMGNCSTNTSSNLDQSITPQTETNYQSSEPSKMVQQNIEEDQKALTSSVNCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGNIAEIVYKGEHNHSKPQLHKRNSAAGTQGSGVMSDGMVQDMWSNSHSERNEGNEVRIENTGLSMHSDYYVKVPQPNDSSLNIGATNAGGGSMENSCGLSGEYEEGSKGFEAQEDEHRSKRRKNENQSNEAALSEEGLVEPRIVMQSFTDSEVLGDGFRWRKYGQKVVKGNPYPRSYFRCTNIMCNVRKHVERAIDDPRSFVTTYEGKHNHEMPLKNTGTVASERDSQASLSKDKP*

>Glyma03g33376.2   sequence type=predicted peptide   gene model=Glyma03g33376   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIKEAQRVVISKPVASRPTCSTFKSFSELLAGAINVSPAIESSPTTVSAIRPKTVRFKPAMNQPPAGFVSSQADTFGAALDNSSDMSPKLDTKQSLIYKPTAKLVSKTTVSLLANMGNCSTNTSSNLDQSITPQTETNYQSSEPSKMVQQNIEEDQKALTSSVNCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGNIAEIVYKGEHNHSKPQLHKRNSAAGTQGSGVMSDGMVQDMWSNSHSERNEGNEVRIENTGLSMHSDYYVKVPQPNDSSLNIGATNAGGGSMENSCGLSGEYEEGSKGFEAQEDEHRSKRRKNENQSNEAALSEEGLVEPRIVMQSFTDSEVLGDGFRWRKYGQKVVKGNPYPRSYFRCTNIMCNVRKHVERAIDDPRSFVTTYEGKHNHEMPLKNTGTVASERDSQASLSKDKP*

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