Glyma03g33280 - SoyBase

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Report for Sequence Feature Glyma03g33280

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40909488
stop:	40913877
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g33280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53490	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02720.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:19832666-19834024 FORWARD LENGTH=225	SoyBase	E_val: 2.00E-72	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I0YSF8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alternative oxidase n=1 Tax=Coccomyxa subellipsoidea C-169 RepID=I0YSF8_9CHLO	SoyBase	E_val: 8.00E-10	ISS
UniRef100_I1JPG7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1JPG7_SOYBN	SoyBase	E_val: 9.00E-161	ISS

Expression Patterns of Glyma03g33280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33280

Paralog	Evidence	Comments
Glyma19g36000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g175700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g33280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g33280

Limit To All Plant Sequences

>Glyma03g33280.2   sequence type=transcript   gene model=Glyma03g33280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAATTTTCCCTTCACACAAACTCGCACCTTTATTCTTTTATTTATTTGTGTGTTTATAGTTTTGGTGAAACCCAACGTAACGCGTACATGTTGGTAGCACAGGATTGATTATATCTGCGGACATGACGCTGAGCTCGATTGAGATCTTCACAACCCACGAGTTGCTTAAAGCCACTCCAACTGTCTATTTTCTGTGCAAAGGGGACAACAAAACTGAATTGCCTGACATCAAAAAACCACATCTCTTATATTCTTTTAAGGGTGAAGAGTCTTGGCAGCCTTTAACTAATTTCTCAGGTAAAAAGTGCAAGAGATGTGGAATCTATGAGGAAGACATTTTTTCAGATGATGTGTTTGATGAGTGGGAATTGTGTCCTTCTGATTTTACCACCCCTGATGGAAGATACGCCCACTTCAAGGAAAAAGAATTCAATGCTAGTTTTCTGTGTCCAGAGTGCTTATCTTTTTCTGGTGTTTCTGTCTCTGCACCACCTGCCGAGAATGACAATCCCAATAAAAAAGGAATGAATGTAGCAGTTATCATTTTGCTAAGTATTTTGGGCTCAACCATATTGATTCTGGGAATGTTGGGTACATACAAGTATTGGCAAAAGAGGAAGAGGGAGCAGGATCAGGCTCGGTTTTTGAAGCTCTTTGAAGAAGGAGATGATATTGAGGATGAGCTCGGCCTTGGCACTATAATATGACAGCAAACAAAATACCCCCTGTACAGTAGGTTTTCCTCACAATTTTGTTCAAGAAAATGGATGAGAAAATATTTTTTTATTTGACATGCAACTTACACTATAAGAGATAGTCGTCAAAGTGGACAGCAATATGTTGTTGTTCATATCACCTGTACATACTACACATTTTCATATGGCTCTTTTTGGACTTCATCTAACTGAAAATGCTATAACAATCTAGTAAAAACTAAGGTTTCAATGATTCCTCCATCTTCAATGGAGATTAAAAGAATACATTATGCAACTTATACACGTGTGTGCCTCTACCTGTGGAACCAAAGCTCAGATGCTGGTTAGGCACTGTATGTGAGTTCAT

Coding sequences of Glyma03g33280

Limit To All Plant Sequences

>Glyma03g33280.1   sequence type=CDS   gene model=Glyma03g33280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCATGTCGCGCAATTCTCTTCTCCTTCTTTTCACCTTCATATTCTTCTTCACCTATTTCCCAGGATTGATTATATCTGCGGACATGACGCTGAGCTCGATTGAGATCTTCACAACCCACGAGTTGCTTAAAGCCACTCCAACTGTCTATTTTCTGTGCAAAGGGGACAACAAAACTGAATTGCCTGACATCAAAAAACCACATCTCTTATATTCTTTTAAGGGTGAAGAGTCTTGGCAGCCTTTAACTAATTTCTCAGGTAAAAAGTGCAAGAGATGTGGAATCTATGAGGAAGACATTTTTTCAGATGATGTGTTTGATGAGTGGGAATTGTGTCCTTCTGATTTTACCACCCCTGATGGAAGATACGCCCACTTCAAGGAAAAAGAATTCAATGCTAGTTTTCTGTGTCCAGAGTGCTTATCTTTTTCTGGTGTTTCTGTCTCTGCACCACCTGCCGAGAATGACAATCCCAATAAAAAAGGAATGAATGTAGCAGTTATCATTTTGCTAAGTATTTTGGGCTCAACCATATTGATTCTGGGAATGTTGGGTACATACAAGTATTGGCAAAAGAGGAAGAGGGAGCAGGATCAGGCTCGGTTTTTGAAGCTCTTTGAAGAAGGAGATGATATTGAGGATGAGCTCGGCCTTGGCACTATAATATGA

>Glyma03g33280.2   sequence type=CDS   gene model=Glyma03g33280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGCTGAGCTCGATTGAGATCTTCACAACCCACGAGTTGCTTAAAGCCACTCCAACTGTCTATTTTCTGTGCAAAGGGGACAACAAAACTGAATTGCCTGACATCAAAAAACCACATCTCTTATATTCTTTTAAGGGTGAAGAGTCTTGGCAGCCTTTAACTAATTTCTCAGGTAAAAAGTGCAAGAGATGTGGAATCTATGAGGAAGACATTTTTTCAGATGATGTGTTTGATGAGTGGGAATTGTGTCCTTCTGATTTTACCACCCCTGATGGAAGATACGCCCACTTCAAGGAAAAAGAATTCAATGCTAGTTTTCTGTGTCCAGAGTGCTTATCTTTTTCTGGTGTTTCTGTCTCTGCACCACCTGCCGAGAATGACAATCCCAATAAAAAAGGAATGAATGTAGCAGTTATCATTTTGCTAAGTATTTTGGGCTCAACCATATTGATTCTGGGAATGTTGGGTACATACAAGTATTGGCAAAAGAGGAAGAGGGAGCAGGATCAGGCTCGGTTTTTGAAGCTCTTTGAAGAAGGAGATGATATTGAGGATGAGCTCGGCCTTGGCACTATAATATGA

Predicted protein sequences of Glyma03g33280

Limit To All Plant Sequences

>Glyma03g33280.1   sequence type=predicted peptide   gene model=Glyma03g33280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMSRNSLLLLFTFIFFFTYFPGLIISADMTLSSIEIFTTHELLKATPTVYFLCKGDNKTELPDIKKPHLLYSFKGEESWQPLTNFSGKKCKRCGIYEEDIFSDDVFDEWELCPSDFTTPDGRYAHFKEKEFNASFLCPECLSFSGVSVSAPPAENDNPNKKGMNVAVIILLSILGSTILILGMLGTYKYWQKRKREQDQARFLKLFEEGDDIEDELGLGTII*

>Glyma03g33280.2   sequence type=predicted peptide   gene model=Glyma03g33280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLSSIEIFTTHELLKATPTVYFLCKGDNKTELPDIKKPHLLYSFKGEESWQPLTNFSGKKCKRCGIYEEDIFSDDVFDEWELCPSDFTTPDGRYAHFKEKEFNASFLCPECLSFSGVSVSAPPAENDNPNKKGMNVAVIILLSILGSTILILGMLGTYKYWQKRKREQDQARFLKLFEEGDDIEDELGLGTII*

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