Glyma03g33220 - SoyBase

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Report for Sequence Feature Glyma03g33220

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40870013
stop:	40871970
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g33220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18520	AT	Annotation by Michelle Graham. TAIR10: Lung seven transmembrane receptor family protein \| chr5:6145027-6146349 FORWARD LENGTH=440	SoyBase	E_val: 0	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0010015	GO-bp	Annotation by Michelle Graham. GO Biological Process: root morphogenesis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
KOG2569	KOG	G protein-coupled seven transmembrane receptor	JGI		ISS
PTHR21229	Panther	LUNG SEVEN TRANSMEMBRANE RECEPTOR	JGI		ISS
PTHR21229:SF2	Panther	LUNG SEVEN TRANSMEMBRANE RECEPTOR	JGI		ISS
PF06814	PFAM	Lung seven transmembrane receptor	JGI		ISS
UniRef100_G7L0Q1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein GPR107 n=1 Tax=Medicago truncatula RepID=G7L0Q1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JPF9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JPF9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g33220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33220

Paralog	Evidence	Comments
Glyma19g35940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g175000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g33220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g33220

Limit To All Plant Sequences

>Glyma03g33220.1   sequence type=CDS   gene model=Glyma03g33220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATGGCCAAAATGCGACCAGCATTGTCCCTTCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCTCCCCCTCCGCGGCGGAGATAAAGTCCCTGAAGATAAACTCCGACACCCGCCCCATGATCCTGTTCGAGAAATTCGGGTTCACCCACAAGGGCCACGTGTCCATCGCCGTCTCCTCGGTCTCCGTCGGCGTGCTCTCCTCCGCAGTGCAACCAGAATCCTCGCGCCTGGGTTTCTTCCTCCTGAACGAAGAATCCCTCCTCCAGGTCCTGATGGAGATCCAGCAGAACCCTTCGTTCTGCGTCCTGGACTCCCACTACATCCTCCTCCTCTTCACCTTCCGCGACCTCTCCCCTCCCCCCGTTGCCTCCTTCAACCGCTCCTACCCCGTCACCTCCCCCAACGAATACTCCCTCTTCTTCGCCAACTGCGCCCCCGAAACCTCCGTCACCATGTCCGTCCACACCGAAGCCTACAATCTCGACGCTGACGGTTCACGCGACTACCTCTCCGCCGGCCAAACCCTCCTCCCTTCCCTCTACTTTCTCTTCTTTTTAACCTACCTCTCCTTCTTCTCCTTCTGGCTCTACATCTGCTACACCAACAAACTCTCCGTTCACCGCATTCACCTCTTAATGTCTCTCCTTCTTCTCATGAAGGCTTTGAATCTAATCTGCGCCGCTGAGGATAAGCATTACGTCAAGGCCACCGGCCTCCCTCACGGATGGGATGTTCTCTTCTACATCTTCCAGTTTATCCGCGTCGTTTTGCTCTTTACTGTCATCGTTTTGATAGGGACAGGATGGTCTTTTCTCAAACCGTTTTTGCAGGACAGGGAGAAGAAGGTGTTGATGATTGTCATCCCGCTTCAGGTTCTCGCCAATTTGGCTTCCGTTGTGATCGGGGAAACAGGTCCTTTCATCAAAGACTGGGTTACTTGGAATCAGGTTTTCTTGCTTGTGGATATTATCTGCTGCTGTGCCATTATTTTCCCTATTGTGTGGTCCATAAGGTCGTTGAGGGAAACTTCGAAAACTGATGGGAAGGCTTCGAGGAATTTGGCCAAGTTGACTCTGTTTAGACAATTCTACATTGTTGTCATTGGATACTTGTATTTCACCAGAATAGTGGTGTTTGCTTTGAGGACCATTGCGGCTTATAAGTACCAATGGGTGAGCAATGCTGCCGAGGAGACCGCGAGTCTTGCGTTTTATGTTGTCATGTTCTATATGTTTAGACCATTGGAGAAGAATGAGTACTTTGTGCTTGATGAGGAGGAAGAGGAGGCTGCGGAAATGGCGCTCAAGGATGAAGACTTTGAGCTTTGA

Predicted protein sequences of Glyma03g33220

Limit To All Plant Sequences

>Glyma03g33220.1   sequence type=predicted peptide   gene model=Glyma03g33220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMAKMRPALSLLLLLLLLLFLLSPSAAEIKSLKINSDTRPMILFEKFGFTHKGHVSIAVSSVSVGVLSSAVQPESSRLGFFLLNEESLLQVLMEIQQNPSFCVLDSHYILLLFTFRDLSPPPVASFNRSYPVTSPNEYSLFFANCAPETSVTMSVHTEAYNLDADGSRDYLSAGQTLLPSLYFLFFLTYLSFFSFWLYICYTNKLSVHRIHLLMSLLLLMKALNLICAAEDKHYVKATGLPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQDREKKVLMIVIPLQVLANLASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKASRNLAKLTLFRQFYIVVIGYLYFTRIVVFALRTIAAYKYQWVSNAAEETASLAFYVVMFYMFRPLEKNEYFVLDEEEEEAAEMALKDEDFEL*

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