Glyma03g33180 - SoyBase

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Report for Sequence Feature Glyma03g33180

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40838150
stop:	40845341
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g33180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07710	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein \| chr1:2386275-2387986 REVERSE LENGTH=543	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
KOG4412	KOG	26S proteasome regulatory complex, subunit PSMD10	JGI		ISS
PTHR24186	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24186:SF119	Panther		JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
UniRef100_G7L0Q4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7L0Q4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JPF5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JPF5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g33180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33180

Paralog	Evidence	Comments
Glyma19g35900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g174500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g33180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g33180

Limit To All Plant Sequences

>Glyma03g33180.2   sequence type=transcript   gene model=Glyma03g33180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAACTTAATGATTTGGATAGAAGTATGGTACTTGATAGAACATTATGACGGAAGTTGATCCATGTAGCCGACCCCACCTAGTGGGATAAGGCGTTGTTGTTGTTGTGACTTTTTTATACCAGGGTGTTTGCTAAAACCATTTGAGTATACCTGTACTTTTGCACTAATTTAACTTCATCTTGATGAATGCTATGCTACATATCTTAAGTCTTTGCTCAATTTGTGAAAGAAACTTGGTTATGTATTGATTTGATACCCAACAATATGTATTTCTCAATGATTTAAGTACTTTTTCCTCCCTTCAAATTTGCCAGAATCTTTATGTCTGTTAGAATTTTAGGTTTCCAATAGACTCTTATTTATTGATTACCTAAATTATAATTTTATTATCAATTTAAATTTGGAATTTGTCTAAGTGATTTTCACTTTTATTGGTTTGCAGAGATATTGAAAGTCCTCATGGAGGCCTTTCCTGAAATTTCAATGACTGTTGATCTGTCGAACACTACTGTGTTGCATACTGCTGCAGCACAAGGACACATTGAGGTAGTAAATTTTCTCTTGGAAAAAGGTAATAGCCTGGTAACTATTGCAAAAAGCAATGGGAAAACTGTGTTGCATTCTTCTGCAAGAAATGGCTACATGGAGGTTGTCAAGGCCCTTGTGAGCAAAGAACCAGAAATTGCAATGAGAATTGATAAAAAGGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAGAATCTTGAGTTGGTGGATGAGCTCGTGAAATTGAATCCATCTTTGGCCAATATGGTGGATACCAAGGGGAACACTGCACTGCATATAGCAACCCGGAAGGGTCGTCTACAGGTTGTTCAGAAGTTACTAGATTGCAGAGAAATAAACACAGATGTTATCAACAAATCTGGAGAAACTGCTTTAGATACTGCAGAGAAAAATGGTCGTTTGGAAATTGCCAACTTTCTGCAACATCATGGAGCTCAAAGTGCCAAGTCCATCAAGTCACCTACTACAAACACGGCCCTTGAGCTCAAACAAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACAATTAAAACGCAAAGACGTATGCAAGGTATAGCGAAGCGAATCAACAAAATGCACACTGAGGGGCTTAACAATGCGATCAACTCCAACATTGTTGTTGCTGTCCTTATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCGGGCCAGTATCCTGAGAAACCAAGTGAACTCTCTCCTGGAATGTCTCCTGGGGAAGCATATATTGCTCCAGATATTGGATTCATGATATTCATAATCTTTGATTCTACTGCCCTCTTCATATCATTGGCTGTTGTGATTGTCCAAACATCAGTGGTTGTTATTGAGAGGAAAGCAAAGAGACAAATGATGGCAGTTATAAATAAGTTGATGTGGGTTGCATGTGTGCTGATTTCTGTGGCATTTATTGCAATGTCATACATAATTGTTGGGGATCATAAAGAGTTGGCTATAGCAGCCACAGCTCTAGGAACAGTGATTATGGCAGCTACTTTAGGAACACTCTGTTATTGGGTGATTGCTCATCGCCTTGAGGCCTCAAGATTGCGAAGTCTTAGGACAACAATGAGCAGTAGGCAGTCAATGTCTATGTCAATGATGTCAGGATCAGAGAATGAGTATAAGACAGTGTATGCAATATAACTTTGATTTCTACCATTTCAGAGTTCTCCCTCCTTTTTTGGCCAGTTACACTAACATTGTAGGTGTTTGTTGCTTAGTAAAACAAACATTAACTAATGCAACAAAAGCATGCCTTTGCAGAACATAGGCAAAAGATGTAATCATAGTCCACTTGATAAGTGAATGTTATTCTAAATTGAAAGTATTGGATCATCATGCCTATTTTAGGTATTTTCACATTAGCTTCATCAGAATTTGAATATTATACAAATTTACTGTTTGTCTATGTCCTATATCACAGAATTTTATTTAGATGAAACTATTATGGCTTGCCATTAATGAGTAA

Coding sequences of Glyma03g33180

Limit To All Plant Sequences

>Glyma03g33180.1   sequence type=CDS   gene model=Glyma03g33180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAGAAACAATTAACAGGTATACGGGGAGATTCTCCCCTGCAATCGGCAATCCGAGCTGGAAATTTAGAATTGGTTCTGGAAATCATCTCTCAGAGTCCAGAGGAAGAATTAAAGGAGTTGCTTTCAAAACAAAACAACTCTTGTGAAACTGCCTTATATGTTGCTGCTGAAAATGGTCATCTTGATATACTCAAGGAATTGATTAGATACCATGATATTGGGTTGGCCAGCTTCAAAGCTAGAAATGGATTTGATGCATTCCACATTGCTGCTAAAAATGGACACTTGGAGATATTGAAAGTCCTCATGGAGGCCTTTCCTGAAATTTCAATGACTGTTGATCTGTCGAACACTACTGTGTTGCATACTGCTGCAGCACAAGGACACATTGAGGTAGTAAATTTTCTCTTGGAAAAAGGTAATAGCCTGGTAACTATTGCAAAAAGCAATGGGAAAACTGTGTTGCATTCTTCTGCAAGAAATGGCTACATGGAGGTTGTCAAGGCCCTTGTGAGCAAAGAACCAGAAATTGCAATGAGAATTGATAAAAAGGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAGAATCTTGAGTTGGTGGATGAGCTCGTGAAATTGAATCCATCTTTGGCCAATATGGTGGATACCAAGGGGAACACTGCACTGCATATAGCAACCCGGAAGGGTCGTCTACAGGTTGTTCAGAAGTTACTAGATTGCAGAGAAATAAACACAGATGTTATCAACAAATCTGGAGAAACTGCTTTAGATACTGCAGAGAAAAATGGTCGTTTGGAAATTGCCAACTTTCTGCAACATCATGGAGCTCAAAGTGCCAAGTCCATCAAGTCACCTACTACAAACACGGCCCTTGAGCTCAAACAAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACAATTAAAACGCAAAGACGTATGCAAGGTATAGCGAAGCGAATCAACAAAATGCACACTGAGGGGCTTAACAATGCGATCAACTCCAACATTGTTGTTGCTGTCCTTATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCGGGCCAGTATCCTGAGAAACCAAGTGAACTCTCTCCTGGAATGTCTCCTGGGGAAGCATATATTGCTCCAGATATTGGATTCATGATATTCATAATCTTTGATTCTACTGCCCTCTTCATATCATTGGCTGTTGTGATTGTCCAAACATCAGTGGTTGTTATTGAGAGGAAAGCAAAGAGACAAATGATGGCAGTTATAAATAAGTTGATGTGGGTTGCATGTGTGCTGATTTCTGTGGCATTTATTGCAATGTCATACATAATTGTTGGGGATCATAAAGAGTTGGCTATAGCAGCCACAGCTCTAGGAACAGTGATTATGGCAGCTACTTTAGGAACACTCTGTTATTGGGTGATTGCTCATCGCCTTGAGGCCTCAAGATTGCGAAGTCTTAGGACAACAATGAGCAGTAGGCAGTCAATGTCTATGTCAATGATGTCAGGATCAGAGAATGAGTATAAGACAGTGTATGCAATATAA

>Glyma03g33180.2   sequence type=CDS   gene model=Glyma03g33180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCCTTTCCTGAAATTTCAATGACTGTTGATCTGTCGAACACTACTGTGTTGCATACTGCTGCAGCACAAGGACACATTGAGGTAGTAAATTTTCTCTTGGAAAAAGGTAATAGCCTGGTAACTATTGCAAAAAGCAATGGGAAAACTGTGTTGCATTCTTCTGCAAGAAATGGCTACATGGAGGTTGTCAAGGCCCTTGTGAGCAAAGAACCAGAAATTGCAATGAGAATTGATAAAAAGGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAGAATCTTGAGTTGGTGGATGAGCTCGTGAAATTGAATCCATCTTTGGCCAATATGGTGGATACCAAGGGGAACACTGCACTGCATATAGCAACCCGGAAGGGTCGTCTACAGGTTGTTCAGAAGTTACTAGATTGCAGAGAAATAAACACAGATGTTATCAACAAATCTGGAGAAACTGCTTTAGATACTGCAGAGAAAAATGGTCGTTTGGAAATTGCCAACTTTCTGCAACATCATGGAGCTCAAAGTGCCAAGTCCATCAAGTCACCTACTACAAACACGGCCCTTGAGCTCAAACAAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACAATTAAAACGCAAAGACGTATGCAAGGTATAGCGAAGCGAATCAACAAAATGCACACTGAGGGGCTTAACAATGCGATCAACTCCAACATTGTTGTTGCTGTCCTTATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCGGGCCAGTATCCTGAGAAACCAAGTGAACTCTCTCCTGGAATGTCTCCTGGGGAAGCATATATTGCTCCAGATATTGGATTCATGATATTCATAATCTTTGATTCTACTGCCCTCTTCATATCATTGGCTGTTGTGATTGTCCAAACATCAGTGGTTGTTATTGAGAGGAAAGCAAAGAGACAAATGATGGCAGTTATAAATAAGTTGATGTGGGTTGCATGTGTGCTGATTTCTGTGGCATTTATTGCAATGTCATACATAATTGTTGGGGATCATAAAGAGTTGGCTATAGCAGCCACAGCTCTAGGAACAGTGATTATGGCAGCTACTTTAGGAACACTCTGTTATTGGGTGATTGCTCATCGCCTTGAGGCCTCAAGATTGCGAAGTCTTAGGACAACAATGAGCAGTAGGCAGTCAATGTCTATGTCAATGATGTCAGGATCAGAGAATGAGTATAAGACAGTGTATGCAATATAA

Predicted protein sequences of Glyma03g33180

Limit To All Plant Sequences

>Glyma03g33180.1   sequence type=predicted peptide   gene model=Glyma03g33180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKKQLTGIRGDSPLQSAIRAGNLELVLEIISQSPEEELKELLSKQNNSCETALYVAAENGHLDILKELIRYHDIGLASFKARNGFDAFHIAAKNGHLEILKVLMEAFPEISMTVDLSNTTVLHTAAAQGHIEVVNFLLEKGNSLVTIAKSNGKTVLHSSARNGYMEVVKALVSKEPEIAMRIDKKGQTALHMAVKGQNLELVDELVKLNPSLANMVDTKGNTALHIATRKGRLQVVQKLLDCREINTDVINKSGETALDTAEKNGRLEIANFLQHHGAQSAKSIKSPTTNTALELKQTVSDIKSGVHNQLEHTIKTQRRMQGIAKRINKMHTEGLNNAINSNIVVAVLIATVAFAAIFNVPGQYPEKPSELSPGMSPGEAYIAPDIGFMIFIIFDSTALFISLAVVIVQTSVVVIERKAKRQMMAVINKLMWVACVLISVAFIAMSYIIVGDHKELAIAATALGTVIMAATLGTLCYWVIAHRLEASRLRSLRTTMSSRQSMSMSMMSGSENEYKTVYAI*

>Glyma03g33180.2   sequence type=predicted peptide   gene model=Glyma03g33180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAFPEISMTVDLSNTTVLHTAAAQGHIEVVNFLLEKGNSLVTIAKSNGKTVLHSSARNGYMEVVKALVSKEPEIAMRIDKKGQTALHMAVKGQNLELVDELVKLNPSLANMVDTKGNTALHIATRKGRLQVVQKLLDCREINTDVINKSGETALDTAEKNGRLEIANFLQHHGAQSAKSIKSPTTNTALELKQTVSDIKSGVHNQLEHTIKTQRRMQGIAKRINKMHTEGLNNAINSNIVVAVLIATVAFAAIFNVPGQYPEKPSELSPGMSPGEAYIAPDIGFMIFIIFDSTALFISLAVVIVQTSVVVIERKAKRQMMAVINKLMWVACVLISVAFIAMSYIIVGDHKELAIAATALGTVIMAATLGTLCYWVIAHRLEASRLRSLRTTMSSRQSMSMSMMSGSENEYKTVYAI*

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