SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G09520 | AT | Annotation by Michelle Graham. TAIR10: exocyst subunit exo70 family protein H4 | chr3:2923743-2925629 FORWARD LENGTH=628 | SoyBase | E_val: 0 | ISS |
| GO:0006887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: exocytosis | SoyBase | N/A | ISS |
| GO:0006904 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis | SoyBase | N/A | ISS |
| GO:0000145 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: exocyst | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG2344 | KOG | Exocyst component protein and related proteins | JGI | ISS | |
| PTHR12542 | Panther | EXOCYST COMPLEX PROTEIN EXO70-RELATED | JGI | ISS | |
| PTHR12542:SF7 | Panther | EXOCYST COMPLEX PROTEIN EXO70 | JGI | ISS | |
| PF03081 | PFAM | Exo70 exocyst complex subunit | JGI | ISS | |
| UniRef100_D7L7W0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATEXO70H4 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L7W0_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A914 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A914 related cluster n=1 Tax=unknown RepID=UPI000233A914 | SoyBase | E_val: 0 | ISS |
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Glyma03g33160 not represented in the dataset |
Glyma03g33160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g35880 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g174300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g33160.1 sequence type=CDS gene model=Glyma03g33160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAAAGTTGTGTTTTAACCCCAAAACGGAGTCGTTTGCTTTGGCACGCAGTTCTCCTTCTTCGCCACTATCCTTAACCTCAAGCCCAACGCTTCCGAGGCTGAGCTTTTCCGAACCTAGCAGCTTCCACGAAGATATTTTCATCGAAGAAGCTGAGGCACTGATACTCAAATGGAACCCAGACTCTTCCGCTTACGCAAAAGTCACTTCCCTCTTCTACCAAGACAGAAACGAAGCCAAACAATATATTAGCTGTGTTAACCAGCTTCAGAAAACTATGCATTCGTTGCTCTCTCAGAACCTTTCCTCTGACAAACTCATCCTCGCTCATAACCTAATGCAGATTGCTATGAAGAGGCTCACGAAAGAGTTCTACCAGATCTTATCCATGAACCGCGCACACCTTGATCCTGAATCCGTCTCCGCCAGATCCTCTCGCACCTCCGCCAATTCCAGCGCCTCCGATTATGACGACGATTTTGCGGCGGAGGACGACGATATCCGCGCCGCCGGCGACTCTATCTCCGAAGTCGAGCAGGTTTCCTCCGGCGCCATGGCGGATCTGAAATTAATCGCTGACTGCATGATATCTTCCGGTTATGCGAAGGAATGCGTCAGCGTCTACATCTTAATTCGAAAATCTATCATCGACGAAGGAATCTACCGCCTCGGCGTGGAGAAACTTAGCTCCTCGCGCGCTAACAAGATGGATTGGGAAGTTCTTGATTTGAAGATCAAGAGTTGGTTAGAGGCGACAAGGATTTCCGTTAGAACACTCTTTAACGGAGAGAGAATACTCTGCGACCACGTCTTCAGTTACTCAGATTCCGTCAGAGAATCATGCTTCGCCGAGATTTCAAGAGACGGTGCCGCTCTCCTTTTCGGATTCCCTGAACTCGTTGCCAAAACAAAGAAATCTTCGCCGGAGAAGCTGTTCCGCGTGCTCGATATGCATGCTGTGGCTTCCGAACTGTTGCCGGAGATCGAGTCTATCTTTTCCTCCGATTACAACTCCGGCGTTCGTTCTCAATTCCTGGTTTCGCTTCAACGACTCACCGAATCGGCGCAAATCTTGCTCGCGGAGTTCGAGTCCACGATCCAGAAAGGCACTTCAAAGCCGGCGGTGAACGGCGGCGGCGTGCACTCGCTCACGATTCAGACGATGAATTACCTTTCAGTCCTCGCCGATTATCTCAACGTGCTCTCGGATATATTTCCGCGCGACTGGCTTCCACCGCAGAAGTCGTCATCTCTGCCGGAATCTTATTTATACAGCCCAGAATCTGATTACTCGGCGTCGACGCCGGCGCTGACAGCGCGTTTTGCGTGGCTGATTCTCGTCCTCCTTTGCAAGCTCGACGGCAAAGCGAAGCATTGCAAGGACGTTTCGCTTTCTTATCTGTTTCTCGCGAACAATCTCTGGTACGTGGTGGCCAGAGTCCGAAGCTCGAACCTGCAGTACGTGCTTGGCGACGATTGGATCCTTAAGCACGAAGCTAAAGCGAAACGGTTCGTTTCGAACTACGAGAAGGTGGCGTGGGGAGAAGTGGTTTCGTCATTGGCGGAAAATCCAGCCGCGGCGGAGGCGAGGGCGGTGTTCGAGAACTTCAACCGCAAATTCGAGGAAGCGTATCGGAAACAGAACTCATTCGTCGTAGCTGACAGAGAATTAAGAGACGAAATAAAAGGTTCGATCGCGAGAAGTATAGTGCCGAGATATCGCGAGTGGTATAATGTTCTTCTAGCTAAGGTTGGATCAGTGAGGGACTTGACGGCGACGGAGTACGTGACGTTTACCCCTGAGGATATTGAAAATTACCTCGTTAACCTCTTCTTTTTTGGAACCTCATCCAGTGCTGTATCGTCCTCGTCGGTATCGTCGTCCCCTCTCCGGCGTTGGAGTTAA
>Glyma03g33160.1 sequence type=predicted peptide gene model=Glyma03g33160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRKLCFNPKTESFALARSSPSSPLSLTSSPTLPRLSFSEPSSFHEDIFIEEAEALILKWNPDSSAYAKVTSLFYQDRNEAKQYISCVNQLQKTMHSLLSQNLSSDKLILAHNLMQIAMKRLTKEFYQILSMNRAHLDPESVSARSSRTSANSSASDYDDDFAAEDDDIRAAGDSISEVEQVSSGAMADLKLIADCMISSGYAKECVSVYILIRKSIIDEGIYRLGVEKLSSSRANKMDWEVLDLKIKSWLEATRISVRTLFNGERILCDHVFSYSDSVRESCFAEISRDGAALLFGFPELVAKTKKSSPEKLFRVLDMHAVASELLPEIESIFSSDYNSGVRSQFLVSLQRLTESAQILLAEFESTIQKGTSKPAVNGGGVHSLTIQTMNYLSVLADYLNVLSDIFPRDWLPPQKSSSLPESYLYSPESDYSASTPALTARFAWLILVLLCKLDGKAKHCKDVSLSYLFLANNLWYVVARVRSSNLQYVLGDDWILKHEAKAKRFVSNYEKVAWGEVVSSLAENPAAAEARAVFENFNRKFEEAYRKQNSFVVADRELRDEIKGSIARSIVPRYREWYNVLLAKVGSVRDLTATEYVTFTPEDIENYLVNLFFFGTSSSAVSSSSVSSSPLRRWS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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