Glyma03g33080 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g33080

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40758313
stop:	40762412
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g33080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53580	AT	Annotation by Michelle Graham. TAIR10: diaminopimelate epimerase family protein \| chr3:19864784-19866907 FORWARD LENGTH=362	SoyBase	E_val: 0	ISS
GO:0006744	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process	SoyBase	N/A	ISS
GO:0009089	GO-bp	Annotation by Michelle Graham. GO Biological Process: lysine biosynthetic process via diaminopimelate	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0008837	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diaminopimelate epimerase activity	SoyBase	N/A	ISS
PF01678	PFAM	Diaminopimelate epimerase	JGI		ISS
UniRef100_C6T990	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T990_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_D2DKE8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Diaminopimelate epimerase n=1 Tax=Glycine max RepID=D2DKE8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g33080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33080

Paralog	Evidence	Comments
Glyma19g35780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g173400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g33080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g33080

Limit To All Plant Sequences

>Glyma03g33080.2   sequence type=CDS   gene model=Glyma03g33080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATAACCGCCACCATTTCCGTTCCCTTCACATCCCCCAGTCGCCGCACTCTCGCCTCCGTCAATAGCCTCTCTCCGCGTTCTACCCGATCCACTTTGCCCACACCGCAACGCACTTTCAAATACCCTAATTCGCGCCTCGTCGTGTCTTCCATGAGCACCGAAACAGCCGTCAAAACTTCATCCGCCTCCTTCCTCAACCGCAAGGAGTCCGGCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTGCAACTGTGTGATCGGAACTTCGGCGTTGGAGCTGACGGAGTTATCTTTGTCTTGCCTGGCATCAGTGGCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAGTTTTACCATTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGATGGAAATGTCAGAGTTGATATGGGGGAACCAATTCTTAAAGCCTCAGATGTGCCTACTAAATTACATGCAAATAAGGATAATGCTGTTGTTAAATCAGAACTAGTTGTAGATGGAGTTATCTGGCATGTGACCTGTGTCAGCATGGGAAATCCACACTGTGTAACTTTCAGTAGAGAAGGAAGCCAGAATTTGCTTGTTGATGAATTGAAGCTAGCAGAAATTGGCCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAGAGTTTGTACAAGTGTTGTCTAATTCTCACTTGAAAATGTGTGTCTGGGAGCGGGGAGCAGGAGCAACCCTAGCCTGTGGAACTGGAGCTTGTGCTACTGTTGTTGCAGCAGTTCTTGAGGGTCGTGCTGGGAGGAATTGCACGGTTGATCTACCTGGAGGACCTCTTCAGATTGAATGGAGGGAGGAAGATAATCATGTTTATATGACAGGCTCAGCCGATGTAGTTTATTACGGATCTTTGCCCCTTTAA

Predicted protein sequences of Glyma03g33080

Limit To All Plant Sequences

>Glyma03g33080.2   sequence type=predicted peptide   gene model=Glyma03g33080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAITATISVPFTSPSRRTLASVNSLSPRSTRSTLPTPQRTFKYPNSRLVVSSMSTETAVKTSSASFLNRKESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPGISGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNVRVDMGEPILKASDVPTKLHANKDNAVVKSELVVDGVIWHVTCVSMGNPHCVTFSREGSQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain