SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G09450 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Fusaric acid resistance protein, conserved region (InterPro:IPR006726); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28780.1); Has 503 Blast hits to 494 proteins in 215 species: Archae - 0; Bacteria - 423; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr3:2907548-2910091 FORWARD LENGTH=775 | SoyBase | E_val: 7.00E-166 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| PF04632 | PFAM | Fusaric acid resistance protein family | JGI | ISS | |
| UniRef100_I1JPC6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPC6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2HT93 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: P-type trefoil, putative n=1 Tax=Medicago truncatula RepID=Q2HT93_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma03g32860 not represented in the dataset |
Glyma03g32860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g171200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g32860.2 sequence type=transcript gene model=Glyma03g32860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTCTATCCATCAAATTACCTCCTCTTCAGTATTCCCCACCCATGTCAAAAACATCCTCAATTACAACCGCACGATCAGAGATGTGGCGTGGTCGTTTAGGCTCTGCCCTACGAACCACCTTAGCATGCACCGTCGCAGGTTGCACCTCCCTTTACGGCCCCGCCCCTCTCCGCCGCTACCTCGAGTTCCCCTCCTTCATGTACGTCACAACCGTCCTCGTAGTGTCGGACGCGACACTCGGGGACACTGTACGAGGTTTCTGGCACGTCGTTTGTTCGAATATTCAGGTCATGATGCTTTCTTTGCTTAGTTTGCAGCTCATAGGGCCTCACAGGTTTAACAGCTGCGTTGCTGCGCTGGCCATGGCGGCTTCGGCGTTCGTCGTTGGGTTGCCGGAGTCGACGCACTTGGTCACTAAGCAACTTGCATTTGGACAGCTTGTGAATGTTTTTGTTAGCACGGTGGTGGATGGTGGACGGACCGGGGTGGCCGTTCACCCAGTTCATGTGGTGTGCTCTACAGCCTTTGGAGGTGTCGCTGCTGTCCTCGCCATGTTGCTTCCATTTCCTCGCCTAGCCCACTATGAGACAAGGAAGTTCTATCGACTATACGCTAAGAATACTTGTGAGAGGTTCGATTGCAACATAGAGGCCATCTCTGCCTCGGACAACTCAACTGCAGTTGGTTTCATCGCTCAAGCCAAGTCCCTCTCCACAACAGGAGCCAAGCTTCTCCAGATTATTAGAAGTAAACAGGTAAGCTAAGTCTAAATCATGGCATTTCACACTGAACCTGCGGCAGCAGTATCATTAATTTCCTACGAATTGGAAATGAGCTAAATGTTTGGTCTGGGTTTTTTCATCAAACAGGATGGCATGCATTGGGAATGGCCACAAACAAGAATTTTCAACTCCCATTGGATTGACCCAGAAGATGAACTGCAACACTTGGAGTTAACAATAAGAGCTACGGATATTGCCCTATCAACTTGTACCTCTTTTCCTGTTGGGGTCATTGATGAGGAGCTCAGAGGTGTCTTGCTCAATTGCAGAGGACACTTCAGCAAAGTCTTAGGTCAGCAAGCCAAGTGCTTTGATTCTTTTGATGCAACCATAACTTCAGATATGAAAAAAGAAATTTTGACCAAAAACCTCTCTATAGCCTATAAAGATCTCCCAACCTCGTTTTTTTTATACTGTGTGCATCTTCTCCTATATGACTCACCCATTGCAAAGAAAACTGACCACGTGCTGGGAAAAACTCAGAAAAGAGGTGATTTCAAATGGAGCGCCAGAAAGACCAGAGAGGTTGTCATGAACTTGATTCCCAACAACCACAACTTGGCTTTTGCATTCAAGTCCTCACTTTCATTAGGCCTCGCTGTGTTTTTAGGTTTAACATATAACAAGGAAAATGGATACTGGGCGGGACTCTTAATTGCCTTGTGTTTCGTGCCTGGACGGCATCCAACATTTTCTCTTGCAAATGCACGAGGACAAGGAACAGCAATGGGATCAATCTATGGGATCCTATGCTGCTTCGTTTTCAAAAAAATTGTGGATTTCAGTTTCTTACCTCTTTTACCATGGATCTTTTTCTCTTCTTTTCTTAAGTATAGTAGAATGTATGGGCAAGCTGGTGGGATTGCAGCAGTTACAGGGGCCTTGTTAGTAGTTGGTATGAAGCACAATGATCCTCCTAGTCAATTTGCACTTGCTAGAATGGTCGAGGCCACAATAGGCCTCCTTTGCTTTGTTATTGTAGAGATTATTTTTAATCCCTGCAGAGCTGCAACTCTAGCAAAATCTGAACTTTCTCAATGCTTGAGATCACTTCATGATTGCATTGGCCAGATTGCCATCATTACTCCTACCAAAAGAGAGATGCCATTTTCAAGCTGTCAAGAATTGAGAGAAGGACAGAAAAAGCTGAAATCTCTAGTGTGCCAATTAGAAGAGTTCACAGCAGAGGCTGAATTGGAGCCAAATTTCTGGTTCATTCCATTTCATAATGCCTGCTACAGAAAGATGCTGGAATCACTATCAAAGATGGCAGATCTCTTACTTTTTGTGGCATACTCAATGGAAAATATCATGCTATTGTCACAGAAAAACGGAGCATTTGGGGTGGATCTCCATGATGGAGTAAACAAGAATGTGAGGATTTTTAAAAACAAAGTTAGCCCCACATTGGAACACCTTGAAGAGATAACAAGGAAAAAGATTCCCGGGAAACTTGCAAATGAGTTGAATAGGAATATTCCTTGTGATATCGAGGCACAAGAACATCCCAATGCAGAAGCACTTAGGGTCTGGAGTGGAGATGAAGTTGTTGATAGCATTACAGGCTCTTTTCTCAAACATCTAGAGGAGATGGCTAACAAAACTCATACCAATATAGATGAGGAGATGCTTAAAAGTCAAATGCTTTTCCATTACAGCTGCTTGGGATTCTGTACTAATAACTTGATGAGAGAAACAATGAAGATTCAGAGTGAAGTAAAAGAACTACTTATGTGGGAGAATCCCTCAAGTCAAACAAATCACAAGTAAATTTATAGTAAAGATCAAGTTCCGTGTTCACAGTAAACCTAGCACCATGACTTGGAGGTGACCTTAAGAAGAGGCTTAGCCCTACAAATTAACCAAGAATGTGTATATATTTGTATAAAATCATCCAGCTAATAAAAAGAAGATCCATCTCCAACAACTGGTGTTTGAAGCACCCAAAAAGAAAATCCAATACTTGATGCAGTACCAACCAATTCTTAAGTAAAGAAATTACCTAATCTACAAAGCACATCAAGTAGCATCCATGGCAAACATCTTAAGGGGGAAAGCTTTAATTGAATGCACATATGATATGCACACAATG
>Glyma03g32860.1 sequence type=CDS gene model=Glyma03g32860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAAAAACATCCTCAATTACAACCGCACGATCAGAGATGTGGCGTGGTCGTTTAGGCTCTGCCCTACGAACCACCTTAGCATGCACCGTCGCAGGTTGCACCTCCCTTTACGGCCCCGCCCCTCTCCGCCGCTACCTCGAGTTCCCCTCCTTCATGTACGTCACAACCGTCCTCGTAGTGTCGGACGCGACACTCGGGGACACTGTACGAGGTTTCTGGCACGTCGTTTGTTCGAATATTCAGGTCATGATGCTTTCTTTGCTTAGTTTGCAGCTCATAGGGCCTCACAGGTTTAACAGCTGCGTTGCTGCGCTGGCCATGGCGGCTTCGGCGTTCGTCGTTGGGTTGCCGGAGTCGACGCACTTGGTCACTAAGCAACTTGCATTTGGACAGCTTGTGAATGTTTTTGTTAGCACGGTGGTGGATGGTGGACGGACCGGGGTGGCCGTTCACCCAGTTCATGTGGTGTGCTCTACAGCCTTTGGAGGTGTCGCTGCTGTCCTCGCCATGTTGCTTCCATTTCCTCGCCTAGCCCACTATGAGACAAGGAAGTTCTATCGACTATACGCTAAGAATACTTGTGAGAGGTTCGATTGCAACATAGAGGCCATCTCTGCCTCGGACAACTCAACTGCAGTTGGTTTCATCGCTCAAGCCAAGTCCCTCTCCACAACAGGAGCCAAGCTTCTCCAGATTATTAGAAGTAAACAGGATGGCATGCATTGGGAATGGCCACAAACAAGAATTTTCAACTCCCATTGGATTGACCCAGAAGATGAACTGCAACACTTGGAGTTAACAATAAGAGCTACGGATATTGCCCTATCAACTTGTACCTCTTTTCCTGTTGGGGTCATTGATGAGGAGCTCAGAGGTGTCTTGCTCAATTGCAGAGGACACTTCAGCAAAGTCTTAGGTCAGCAAGCCAAGTGCTTTGATTCTTTTGATGCAACCATAACTTCAGATATGAAAAAAGAAATTTTGACCAAAAACCTCTCTATAGCCTATAAAGATCTCCCAACCTCGTTTTTTTTATACTGTGTGCATCTTCTCCTATATGACTCACCCATTGCAAAGAAAACTGACCACGTGCTGGGAAAAACTCAGAAAAGAGGTGATTTCAAATGGAGCGCCAGAAAGACCAGAGAGGTTGTCATGAACTTGATTCCCAACAACCACAACTTGGCTTTTGCATTCAAGTCCTCACTTTCATTAGGCCTCGCTGTGTTTTTAGGTTTAACATATAACAAGGAAAATGGATACTGGGCGGGACTCTTAATTGCCTTGTGTTTCGTGCCTGGACGGCATCCAACATTTTCTCTTGCAAATGCACGAGGACAAGGAACAGCAATGGGATCAATCTATGGGATCCTATGCTGCTTCGTTTTCAAAAAAATTGTGGATTTCAGTTTCTTACCTCTTTTACCATGGATCTTTTTCTCTTCTTTTCTTAAGTATAGTAGAATGTATGGGCAAGCTGGTGGGATTGCAGCAGTTACAGGGGCCTTGTTAGTAGTTGGTATGAAGCACAATGATCCTCCTAGTCAATTTGCACTTGCTAGAATGGTCGAGGCCACAATAGGCCTCCTTTGCTTTGTTATTGTAGAGATTATTTTTAATCCCTGCAGAGCTGCAACTCTAGCAAAATCTGAACTTTCTCAATGCTTGAGATCACTTCATGATTGCATTGGCCAGATTGCCATCATTACTCCTACCAAAAGAGAGATGCCATTTTCAAGCTGTCAAGAATTGAGAGAAGGACAGAAAAAGCTGAAATCTCTAGTGTGCCAATTAGAAGAGTTCACAGCAGAGGCTGAATTGGAGCCAAATTTCTGGTTCATTCCATTTCATAATGCCTGCTACAGAAAGATGCTGGAATCACTATCAAAGATGGCAGATCTCTTACTTTTTGTGGCATACTCAATGGAAAATATCATGCTATTGTCACAGAAAAACGGAGCATTTGGGGTGGATCTCCATGATGGAGTAAACAAGAATGTGAGGATTTTTAAAAACAAAGTTAGCCCCACATTGGAACACCTTGAAGAGATAACAAGGAAAAAGATTCCCGGGAAACTTGCAAATGAGTTGAATAGGAATATTCCTTGTGATATCGAGGCACAAGAACATCCCAATGCAGAAGCACTTAGGGTCTGGAGTGGAGATGAAGTTGTTGATAGCATTACAGGCTCTTTTCTCAAACATCTAGAGGAGATGGCTAACAAAACTCATACCAATATAGATGAGGAGATGCTTAAAAGTCAAATGCTTTTCCATTACAGCTGCTTGGGATTCTGTACTAATAACTTGATGAGAGAAACAATGAAGATTCAGAGTGAAGTAAAAGAACTACTTATGTGGGAGAATCCCTCAAGTCAAACAAATCACAAGTAA >Glyma03g32860.2 sequence type=CDS gene model=Glyma03g32860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGGTCTGGGTTTTTTCATCAAACAGGATGGCATGCATTGGGAATGGCCACAAACAAGAATTTTCAACTCCCATTGGATTGACCCAGAAGATGAACTGCAACACTTGGAGTTAACAATAAGAGCTACGGATATTGCCCTATCAACTTGTACCTCTTTTCCTGTTGGGGTCATTGATGAGGAGCTCAGAGGTGTCTTGCTCAATTGCAGAGGACACTTCAGCAAAGTCTTAGGTCAGCAAGCCAAGTGCTTTGATTCTTTTGATGCAACCATAACTTCAGATATGAAAAAAGAAATTTTGACCAAAAACCTCTCTATAGCCTATAAAGATCTCCCAACCTCGTTTTTTTTATACTGTGTGCATCTTCTCCTATATGACTCACCCATTGCAAAGAAAACTGACCACGTGCTGGGAAAAACTCAGAAAAGAGGTGATTTCAAATGGAGCGCCAGAAAGACCAGAGAGGTTGTCATGAACTTGATTCCCAACAACCACAACTTGGCTTTTGCATTCAAGTCCTCACTTTCATTAGGCCTCGCTGTGTTTTTAGGTTTAACATATAACAAGGAAAATGGATACTGGGCGGGACTCTTAATTGCCTTGTGTTTCGTGCCTGGACGGCATCCAACATTTTCTCTTGCAAATGCACGAGGACAAGGAACAGCAATGGGATCAATCTATGGGATCCTATGCTGCTTCGTTTTCAAAAAAATTGTGGATTTCAGTTTCTTACCTCTTTTACCATGGATCTTTTTCTCTTCTTTTCTTAAGTATAGTAGAATGTATGGGCAAGCTGGTGGGATTGCAGCAGTTACAGGGGCCTTGTTAGTAGTTGGTATGAAGCACAATGATCCTCCTAGTCAATTTGCACTTGCTAGAATGGTCGAGGCCACAATAGGCCTCCTTTGCTTTGTTATTGTAGAGATTATTTTTAATCCCTGCAGAGCTGCAACTCTAGCAAAATCTGAACTTTCTCAATGCTTGAGATCACTTCATGATTGCATTGGCCAGATTGCCATCATTACTCCTACCAAAAGAGAGATGCCATTTTCAAGCTGTCAAGAATTGAGAGAAGGACAGAAAAAGCTGAAATCTCTAGTGTGCCAATTAGAAGAGTTCACAGCAGAGGCTGAATTGGAGCCAAATTTCTGGTTCATTCCATTTCATAATGCCTGCTACAGAAAGATGCTGGAATCACTATCAAAGATGGCAGATCTCTTACTTTTTGTGGCATACTCAATGGAAAATATCATGCTATTGTCACAGAAAAACGGAGCATTTGGGGTGGATCTCCATGATGGAGTAAACAAGAATGTGAGGATTTTTAAAAACAAAGTTAGCCCCACATTGGAACACCTTGAAGAGATAACAAGGAAAAAGATTCCCGGGAAACTTGCAAATGAGTTGAATAGGAATATTCCTTGTGATATCGAGGCACAAGAACATCCCAATGCAGAAGCACTTAGGGTCTGGAGTGGAGATGAAGTTGTTGATAGCATTACAGGCTCTTTTCTCAAACATCTAGAGGAGATGGCTAACAAAACTCATACCAATATAGATGAGGAGATGCTTAAAAGTCAAATGCTTTTCCATTACAGCTGCTTGGGATTCTGTACTAATAACTTGATGAGAGAAACAATGAAGATTCAGAGTGAAGTAAAAGAACTACTTATGTGGGAGAATCCCTCAAGTCAAACAAATCACAAGTAA
>Glyma03g32860.1 sequence type=predicted peptide gene model=Glyma03g32860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKTSSITTARSEMWRGRLGSALRTTLACTVAGCTSLYGPAPLRRYLEFPSFMYVTTVLVVSDATLGDTVRGFWHVVCSNIQVMMLSLLSLQLIGPHRFNSCVAALAMAASAFVVGLPESTHLVTKQLAFGQLVNVFVSTVVDGGRTGVAVHPVHVVCSTAFGGVAAVLAMLLPFPRLAHYETRKFYRLYAKNTCERFDCNIEAISASDNSTAVGFIAQAKSLSTTGAKLLQIIRSKQDGMHWEWPQTRIFNSHWIDPEDELQHLELTIRATDIALSTCTSFPVGVIDEELRGVLLNCRGHFSKVLGQQAKCFDSFDATITSDMKKEILTKNLSIAYKDLPTSFFLYCVHLLLYDSPIAKKTDHVLGKTQKRGDFKWSARKTREVVMNLIPNNHNLAFAFKSSLSLGLAVFLGLTYNKENGYWAGLLIALCFVPGRHPTFSLANARGQGTAMGSIYGILCCFVFKKIVDFSFLPLLPWIFFSSFLKYSRMYGQAGGIAAVTGALLVVGMKHNDPPSQFALARMVEATIGLLCFVIVEIIFNPCRAATLAKSELSQCLRSLHDCIGQIAIITPTKREMPFSSCQELREGQKKLKSLVCQLEEFTAEAELEPNFWFIPFHNACYRKMLESLSKMADLLLFVAYSMENIMLLSQKNGAFGVDLHDGVNKNVRIFKNKVSPTLEHLEEITRKKIPGKLANELNRNIPCDIEAQEHPNAEALRVWSGDEVVDSITGSFLKHLEEMANKTHTNIDEEMLKSQMLFHYSCLGFCTNNLMRETMKIQSEVKELLMWENPSSQTNHK* >Glyma03g32860.2 sequence type=predicted peptide gene model=Glyma03g32860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFGLGFFIKQDGMHWEWPQTRIFNSHWIDPEDELQHLELTIRATDIALSTCTSFPVGVIDEELRGVLLNCRGHFSKVLGQQAKCFDSFDATITSDMKKEILTKNLSIAYKDLPTSFFLYCVHLLLYDSPIAKKTDHVLGKTQKRGDFKWSARKTREVVMNLIPNNHNLAFAFKSSLSLGLAVFLGLTYNKENGYWAGLLIALCFVPGRHPTFSLANARGQGTAMGSIYGILCCFVFKKIVDFSFLPLLPWIFFSSFLKYSRMYGQAGGIAAVTGALLVVGMKHNDPPSQFALARMVEATIGLLCFVIVEIIFNPCRAATLAKSELSQCLRSLHDCIGQIAIITPTKREMPFSSCQELREGQKKLKSLVCQLEEFTAEAELEPNFWFIPFHNACYRKMLESLSKMADLLLFVAYSMENIMLLSQKNGAFGVDLHDGVNKNVRIFKNKVSPTLEHLEEITRKKIPGKLANELNRNIPCDIEAQEHPNAEALRVWSGDEVVDSITGSFLKHLEEMANKTHTNIDEEMLKSQMLFHYSCLGFCTNNLMRETMKIQSEVKELLMWENPSSQTNHK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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