Glyma03g32730 - SoyBase

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Report for Sequence Feature Glyma03g32730

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40520419
stop:	40520947
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g32730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G26594	AT	Annotation by Michelle Graham. TAIR10: response regulator 24 \| chr5:9269282-9270254 FORWARD LENGTH=139	SoyBase	E_val: 3.00E-41	ISS
GO:0000160	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity	SoyBase	N/A	ISS
PTHR26402	Panther	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	JGI		ISS
PTHR26402:SF221	Panther		JGI		ISS
PF00072	PFAM	Response regulator receiver domain	JGI		ISS
UniRef100_B9GR96	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Extra response regulator n=1 Tax=Populus trichocarpa RepID=B9GR96_POPTR	SoyBase	E_val: 5.00E-43	ISS
UniRef100_I1JPB6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JPB6_SOYBN	SoyBase	E_val: 5.00E-71	ISS

Expression Patterns of Glyma03g32730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g32730

Paralog	Evidence	Comments
Glyma19g35480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g32730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g170200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g32730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g32730

Limit To All Plant Sequences

>Glyma03g32730.1   sequence type=CDS   gene model=Glyma03g32730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCATCGAAAGATGCTGAACAGTGTTGGATTGAAAATTCAAGTCGCGGAAAACGGAAAAGAAGCTGTAGAAATTCATCGCTCCGGACAAAGTTTTGACCTAATTCTCATGGATAGGGATATGCCTGTTATGAATGGCATTGAGGCCACAAAGACACTTCGATCAATGGGGATTAATAGCACGATTACTGGTGTATCAACACGCTCAGTGACAGCGCATATACGAGAATTTATGGAAGCAGGACTAGATGACTACCTAGAGAAGCCCCTGACCCTTGTTAAGCTTACTTCGATCATTCACAAGATGAACAAATTAATTAAGTCAGATTTGAGCATGTAA

Predicted protein sequences of Glyma03g32730

Limit To All Plant Sequences

>Glyma03g32730.1   sequence type=predicted peptide   gene model=Glyma03g32730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVHRKMLNSVGLKIQVAENGKEAVEIHRSGQSFDLILMDRDMPVMNGIEATKTLRSMGINSTITGVSTRSVTAHIREFMEAGLDDYLEKPLTLVKLTSIIHKMNKLIKSDLSM*

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