Glyma03g32700 - SoyBase

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Report for Sequence Feature Glyma03g32700

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40476046
stop:	40483292
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g32700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G20210	AT	Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein \| chr2:8721606-8725042 REVERSE LENGTH=604	SoyBase	E_val: 3.00E-158	ISS
GO:0016114	GO-bp	Annotation by Michelle Graham. GO Biological Process: terpenoid biosynthetic process	SoyBase	N/A	ISS
KOG4308	KOG	LRR-containing protein	JGI		ISS
UniRef100_B9S586	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9S586_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336E7B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336E7B related cluster n=1 Tax=unknown RepID=UPI0002336E7B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g32700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g32700

Paralog	Evidence	Comments
Glyma19g35450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g32700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g169900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g32700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g32700

Limit To All Plant Sequences

>Glyma03g32700.4   sequence type=transcript   gene model=Glyma03g32700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCTGTTGGTTGATTTTGTAACTTTAAAAATATAATATTAATACTATAACAGTAAATATAAAAGAACAAAGAAAAAATAATAGTTTAGCGTTGACCGTAGTAGACTCGAATTGTTGTTGTTGTGGTGAGTGTTTGGGCACGATGGCGGAGGCTCCTCCGTCTCTATTATCTGTGTGCATCGACGCTCTCACACAACAACTTCTCCGTCCATGCGATGATGATCTTCTTCCTTGTATCTACGATCTTCCTTCTCACTTACTCGACACCTTAATCACGCGTTTGCCCCCTCTCGCACTCCGCACATTCCACCACCACCTGCCATTCGACGAGGAAGGGTTTTCTCACGACGACTCAACCAAAAAGCGAAAACGCGCAAGGGATTGGAATTTAAATTCAGCTTGGCAGAGGTTGTTTCAGCTACGCTGGCCTGATCGCGTTAAGCAGATTCATAGAACGGATTGGGAGCAACTCTATTGGGAAACTCATTTGCAAGATTGTTTAGATGAAGCAGTGGAGGTAGCACTAATTCCATCTTTTACTGGATATATTGGTGACATACAGATTTCAGATAGCATACTGAAATATATTGGCTTTGTGGGGAATACAAACCATTCTACTTGTGACCATTCAAAATTGTCTTACCATTGCCTACAATTTGGCAGCCATGTGAGTTGCCTGGGGCTGCAAAATGTTCTATGTACTGCAGAAACTAGTGTTTTGTTGAGGGAATGCAAGCTACAGAGTCTGGTACTTAGATGTATCAGATCCAAGGAACAAATTGATGGATTATGCAAACTTCTTGCTCAACATTGTAGAACGTTAACGTCTCTGGAATTTGTTCACTGTGCACTCTCAACAGATTTTATTAATGCAATATTTGGCTCTTTAGTCATAGAGAGAGTACAAAAACATGGGATCCAACATTTGTCAATCATTGCCACAAGTTTTCTGGAACCATGTACAGTTTCTTTACCTAGTGGACTCGTGTCGTTTTTGTCTTCGGGAAGGTCCTTGTGCTCATTAAAATTATCTGAGAACCACCATGGATGGACTTTTGCCAAAGATCTTTTTGTGACTCTTCTCAATCTTTCATCTGGCATATCTGTCCTTGACCTTTCTCGGAATAGAATATCAGGATGGCTTTTTTACTACAGGAGATCCTTGAGTGGTTCACATCTGTCGTTTGGAAATGGAAAGTCCTTGAAACTGTTGCGTGTACTCAATCTGAGGGAAAACAATTTAGGAAAAGATGATGTACAACATCTTAGATATGCTCTTGAACATGTGCCTAACTTGGAGGAGCTGGATATAAGTGACAATTCAATTGAAGATGAAGGAATCAGGAATTTAATTCCCTATTTTGTTGGAGCATCTGAAACCTGTCCTCGCATAACTTGTTTGAAATTAGAGAACTGTGATCTGTCCTGTGTTGGAGTGAATCTTCTCCTACATTACCTTTCTACTTTCAAAGGACCATTAAAGTCTCTTTCTATTGCTGAGAATTACCTTGGCAGGTTTGTGTATAGCAATAAAATCTCATTTCAGCACTAAGTTCATCTCTCCATCTGTATTTTGACTGGGTTTTCTTATATAGACAAGTAGTTGAAGCATTGGGAAATTTTTTTCACACCCCAATCGAAGTACTTGACATTGCAGGCATTGGATTGGGTTCTGACGGTTTTCAAGAGCTTCAAAGTCTAATAAAAGAGGAGATTAAGCTGGTGAAAATTAATATAAGGCTCCACAACTAGTTGATGTGAATGCAGCCTGTAATCTTATGCCAATAGAATCACTGGCCATCATCTGCTGTGCATTAAAGTTTGCAAAAGGTGTGTTAGTGTTTGTTCTATT

Coding sequences of Glyma03g32700

Limit To All Plant Sequences

>Glyma03g32700.3   sequence type=CDS   gene model=Glyma03g32700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGGCTCCTCCGTCTCTATTATCTGTGTGCATCGACGCTCTCACACAACAACTTCTCCGTCCATGCGATGATGATCTTCTTCCTTGTATCTACGATCTTCCTTCTCACTTACTCGACACCTTAATCACGCGTTTGCCCCCTCTCGCACTCCGCACATTCCACCACCACCTGCCATTCGACGAGGAAGGGTTTTCTCACGACGACTCAACCAAAAAGCGAAAACGCGCAAGGGATTGGAATTTAAATTCAGCTTGGCAGAGGTTGTTTCAGCTACGCTGGCCTGATCGCGTTAAGCAGATTCATAGAACGGATTGGGAGCAACTCTATTGGGAAACTCATTTGCAAGATTGTTTAGATGAAGCAGTGGAGGTAGCACTAATTCCATCTTTTACTGGATATATTGGTGACATACAGATTTCAGATAGCATACTGAAATATATTGGCTTTGTGGGGAATACAAACCATTCTACTTGTGACCATTCAAAATTGTCTTACCATTGCCTACAATTTGGCAGCCATGTGAGTTGCCTGGGGCTGCAAAATGTTCTATGTACTGCAGAAACTAGTGTTTTGTTGAGGGAATGCAAGCTACAGAGTCTGGTACTTAGATGTATCAGATCCAAGGAACAAATTGATGGATTATGCAAACTTCTTGCTCAACATTGTAGAACGTTAACGTCTCTGGAATTTGTTCACTGTGCACTCTCAACAGATTTTATTAATGCAATATTTGGCTCTTTAGTCATAGAGAGAGTACAAAAACATGGGATCCAACATTTGTCAATCATTGCCACAAGTTTTCTGGAACCATGTACAGTTTCTTTACCTAGTGGACTCGTGTCGTTTTTGTCTTCGGGAAGGTCCTTGTGCTCATTAAAATTATCTGAGAACCACCATGGATGGACTTTTGCCAAAGATCTTTTTGTGACTCTTCTCAATCTTTCATCTGGCATATCTGTCCTTGACCTTTCTCGGAATAGAATATCAGGATGGCTTTTTTACTACAGGAGATCCTTGAGTGGTTCACATCTGTCGTTTGGAAATGGAAAGTCCTTGAAACTGTTGCGTGTACTCAATCTGAGGGAAAACAATTTAGGAAAAGATGATGTACAACATCTTAGATATGCTCTTGAACATGTGCCTAACTTGGAGGAGCTGGATATAAGTGACAATTCAATTGAAGATGAAGGAATCAGGAATTTAATTCCCTATTTTGTTGGAGCATCTGAAACCTGTCCTCGCATAACTTGTTTGAAATTAGAGAACTGTGATCTGTCCTGTGTTGGAGTGAATCTTCTCCTACATTACCTTTCTACTTTCAAAGGACCATTAAAGTCTCTTTCTATTGCTGAGAATTACCTTGGCAGACAAGTAGTTGAAGCATTGGGAAATTTTTTTCACACCCCAATCGAAGTACTTGACATTGCAGGCATTGGATTGGGTTCTGACGGTTTTCAAGAGCTTCAAAGTCTAATAAAAGAGGAGATTAAGCTGGTGAAAATTAATATAAGCAAAAATCGTGGTGGGACTGAAACTGCCAAATTTTTGTCCAAACTCTTGTCACAGGCTCCACAACTAGTTGATGTGAATGCAGCCTGTAATCTTATGCCAATAGAATCACTGGCCATCATCTGCTGTGCATTAAAGTTTGCAAAAGGTAATGTTCAGCAAGTGGACTTGACAGGACATATATGGGACTATAAGCCAGAGCATGTTTCCCCTTACGCTGAATTTGTACATAATGGATTACCTATATTGGTTCTTCCATCACCATCAGTCTCTGCTGCTCCTCACGACCATGATCCTTAG

>Glyma03g32700.4   sequence type=CDS   gene model=Glyma03g32700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGGCTCCTCCGTCTCTATTATCTGTGTGCATCGACGCTCTCACACAACAACTTCTCCGTCCATGCGATGATGATCTTCTTCCTTGTATCTACGATCTTCCTTCTCACTTACTCGACACCTTAATCACGCGTTTGCCCCCTCTCGCACTCCGCACATTCCACCACCACCTGCCATTCGACGAGGAAGGGTTTTCTCACGACGACTCAACCAAAAAGCGAAAACGCGCAAGGGATTGGAATTTAAATTCAGCTTGGCAGAGGTTGTTTCAGCTACGCTGGCCTGATCGCGTTAAGCAGATTCATAGAACGGATTGGGAGCAACTCTATTGGGAAACTCATTTGCAAGATTGTTTAGATGAAGCAGTGGAGGTAGCACTAATTCCATCTTTTACTGGATATATTGGTGACATACAGATTTCAGATAGCATACTGAAATATATTGGCTTTGTGGGGAATACAAACCATTCTACTTGTGACCATTCAAAATTGTCTTACCATTGCCTACAATTTGGCAGCCATGTGAGTTGCCTGGGGCTGCAAAATGTTCTATGTACTGCAGAAACTAGTGTTTTGTTGAGGGAATGCAAGCTACAGAGTCTGGTACTTAGATGTATCAGATCCAAGGAACAAATTGATGGATTATGCAAACTTCTTGCTCAACATTGTAGAACGTTAACGTCTCTGGAATTTGTTCACTGTGCACTCTCAACAGATTTTATTAATGCAATATTTGGCTCTTTAGTCATAGAGAGAGTACAAAAACATGGGATCCAACATTTGTCAATCATTGCCACAAGTTTTCTGGAACCATGTACAGTTTCTTTACCTAGTGGACTCGTGTCGTTTTTGTCTTCGGGAAGGTCCTTGTGCTCATTAAAATTATCTGAGAACCACCATGGATGGACTTTTGCCAAAGATCTTTTTGTGACTCTTCTCAATCTTTCATCTGGCATATCTGTCCTTGACCTTTCTCGGAATAGAATATCAGGATGGCTTTTTTACTACAGGAGATCCTTGAGTGGTTCACATCTGTCGTTTGGAAATGGAAAGTCCTTGAAACTGTTGCGTGTACTCAATCTGAGGGAAAACAATTTAGGAAAAGATGATGTACAACATCTTAGATATGCTCTTGAACATGTGCCTAACTTGGAGGAGCTGGATATAAGTGACAATTCAATTGAAGATGAAGGAATCAGGAATTTAATTCCCTATTTTGTTGGAGCATCTGAAACCTGTCCTCGCATAACTTGTTTGAAATTAGAGAACTGTGATCTGTCCTGTGTTGGAGTGAATCTTCTCCTACATTACCTTTCTACTTTCAAAGGACCATTAAAGTCTCTTTCTATTGCTGAGAATTACCTTGGCAGGTTTGTGTATAGCAATAAAATCTCATTTCAGCACTAA

Predicted protein sequences of Glyma03g32700

Limit To All Plant Sequences

>Glyma03g32700.3   sequence type=predicted peptide   gene model=Glyma03g32700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEAPPSLLSVCIDALTQQLLRPCDDDLLPCIYDLPSHLLDTLITRLPPLALRTFHHHLPFDEEGFSHDDSTKKRKRARDWNLNSAWQRLFQLRWPDRVKQIHRTDWEQLYWETHLQDCLDEAVEVALIPSFTGYIGDIQISDSILKYIGFVGNTNHSTCDHSKLSYHCLQFGSHVSCLGLQNVLCTAETSVLLRECKLQSLVLRCIRSKEQIDGLCKLLAQHCRTLTSLEFVHCALSTDFINAIFGSLVIERVQKHGIQHLSIIATSFLEPCTVSLPSGLVSFLSSGRSLCSLKLSENHHGWTFAKDLFVTLLNLSSGISVLDLSRNRISGWLFYYRRSLSGSHLSFGNGKSLKLLRVLNLRENNLGKDDVQHLRYALEHVPNLEELDISDNSIEDEGIRNLIPYFVGASETCPRITCLKLENCDLSCVGVNLLLHYLSTFKGPLKSLSIAENYLGRQVVEALGNFFHTPIEVLDIAGIGLGSDGFQELQSLIKEEIKLVKINISKNRGGTETAKFLSKLLSQAPQLVDVNAACNLMPIESLAIICCALKFAKGNVQQVDLTGHIWDYKPEHVSPYAEFVHNGLPILVLPSPSVSAAPHDHDP*

>Glyma03g32700.4   sequence type=predicted peptide   gene model=Glyma03g32700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEAPPSLLSVCIDALTQQLLRPCDDDLLPCIYDLPSHLLDTLITRLPPLALRTFHHHLPFDEEGFSHDDSTKKRKRARDWNLNSAWQRLFQLRWPDRVKQIHRTDWEQLYWETHLQDCLDEAVEVALIPSFTGYIGDIQISDSILKYIGFVGNTNHSTCDHSKLSYHCLQFGSHVSCLGLQNVLCTAETSVLLRECKLQSLVLRCIRSKEQIDGLCKLLAQHCRTLTSLEFVHCALSTDFINAIFGSLVIERVQKHGIQHLSIIATSFLEPCTVSLPSGLVSFLSSGRSLCSLKLSENHHGWTFAKDLFVTLLNLSSGISVLDLSRNRISGWLFYYRRSLSGSHLSFGNGKSLKLLRVLNLRENNLGKDDVQHLRYALEHVPNLEELDISDNSIEDEGIRNLIPYFVGASETCPRITCLKLENCDLSCVGVNLLLHYLSTFKGPLKSLSIAENYLGRFVYSNKISFQH*

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