Glyma03g32630 - SoyBase

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Report for Sequence Feature Glyma03g32630

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40349500
stop:	40353871
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g32630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43920	AT	Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein \| chr5:17673397-17675630 FORWARD LENGTH=523	SoyBase	E_val: 0	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0293	KOG	WD40 repeat-containing protein	JGI		ISS
PTHR22838	Panther	WD REPEAT PROTEIN 26-RELATED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_B9T5V7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T5V7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336E76	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336E76 related cluster n=1 Tax=unknown RepID=UPI0002336E76	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g32630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g32630

Paralog	Evidence	Comments
Glyma19g35380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g32630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma03g32630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g32630

Limit To All Plant Sequences

>Glyma03g32630.2   sequence type=CDS   gene model=Glyma03g32630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCTCTGCGTCGTGTTTGGAATCGGAATCTGGTGTTTCGTACAAGTCCAATGAGGTTAAGTTGCTTGAATCACTTATTTCGAATGGGAATTGGGATGAAAGCATTGGTTATCTCAATTCGATAAAGAATGTGTTGGGTGAAACCAGGGAATCTACTCTGTTTCTTGTATTCAAACAGTGTGTTATGGAGTATTTGAATTGCGGCGAGGATGCGTTAGCTTTAGGGGTGTTGAGGAAGCAGGTTTCTGCCTTGGATGTGGACAAGTGCAAAGTTCACAGCTTGGCTAAGTGCTTGCTTTCGTTTAATAAGGATAGGGAGTTAGGTGCAGTTGATGGTGGTGATGTTGTTGTTGTTGTACATGACTTGCTAAAGAAGTTGTTAGAGGATTTGGAGAAGTTGTTTCCTCCTCCGGTTTCGGTGCCTGAAGGAAGGTTGGAGCATTTGGTAGAAAGTACTGTTATGTCTTGGGTTGATTCATGTATGTATCATATTCGTCGAATACAATTTCCCTTTATGAGGAATGAGGATCATCACTGCAGCAGGGATCAGATTCCTACTTCAACGACTCAGATATTGACTGGACATAAAAATGAAGTTTGGTTTGTTCAATTTTCTAATAATGGGGAGTACCTGGTCTCTTCATCCAATGATTGCACAGCCATCATATGGAAGGTGCTGGAGGATGGGAAATTGACATTGAAACACACACTTTGTGGTCACCAACATGCTGTATCTTTTGTAGCATGGAGTCCTGATGACACCAAGTTGCTTACATGTGGGAACACAGAAGTTTTGAAGCCGTGGGATGTTGAAACAGGTACATGCAAGCACACATTTGGGAATCAAGGTTTTGTTGTCAGCTCTTGTGCCTGGTTTCCCAACTCAAAACAGTTTGGGTGTGGCAGCTCTGACCCTGAAAAGGGTGTTTGCATGTGGGATTGTGATGGAAACGTGATAAAATCATGGATAGGAATGAGGATGCCCAAGGTCGTCGATCTTGCTGTTACTCCAGATGGTGAGTATCTTATCAGCATATTCATGGATAAAGAAATTCGGATTCTGCACATGGGAACCAGTGCCGAGCAAGTCATTTCAGAGGAGCACCCAATCACGTCCCTTTCAGTTTCAGGAGATAGCAAGTTCTTCATTGTCAATCTAAACAGCCAAGAGATTCATATGTGGGATGTTGCTGGGAAATGGGATAAGCCATTGAGGTTTATGGGCCACAAGCAACACAAATATGTGATAAGGTCATGCTTTGGTGGATTGAATAACACGTTTATCGCCAGTGGTTGTGAGAATTCACAGGTGTACATTTGGAACTGCAGGAACTCTAGGCCTATAGAAGTTCTATCTGGGCACTCCATCACTGTGAACTGTGTGAGCTGGAACCCCAAAATACCTCAAATGTTGGCATCTGCAAGATCATGTAGGACCCTAATTGTTCCTTCGACGACTCCACGACATCCACCACCACGAATGTCGTGCCGGTATTGGAGTCGTCTTGCCCAAGCTCTGGAGCCATCACGTGATATCCCACTGAGCCAAGAGCCAGAGCTCGAGGAACAACACCATTCTTGA

Predicted protein sequences of Glyma03g32630

Limit To All Plant Sequences

>Glyma03g32630.2   sequence type=predicted peptide   gene model=Glyma03g32630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SSASCLESESGVSYKSNEVKLLESLISNGNWDESIGYLNSIKNVLGETRESTLFLVFKQCVMEYLNCGEDALALGVLRKQVSALDVDKCKVHSLAKCLLSFNKDRELGAVDGGDVVVVVHDLLKKLLEDLEKLFPPPVSVPEGRLEHLVESTVMSWVDSCMYHIRRIQFPFMRNEDHHCSRDQIPTSTTQILTGHKNEVWFVQFSNNGEYLVSSSNDCTAIIWKVLEDGKLTLKHTLCGHQHAVSFVAWSPDDTKLLTCGNTEVLKPWDVETGTCKHTFGNQGFVVSSCAWFPNSKQFGCGSSDPEKGVCMWDCDGNVIKSWIGMRMPKVVDLAVTPDGEYLISIFMDKEIRILHMGTSAEQVISEEHPITSLSVSGDSKFFIVNLNSQEIHMWDVAGKWDKPLRFMGHKQHKYVIRSCFGGLNNTFIASGCENSQVYIWNCRNSRPIEVLSGHSITVNCVSWNPKIPQMLASARSCRTLIVPSTTPRHPPPRMSCRYWSRLAQALEPSRDIPLSQEPELEEQHHS*

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