Glyma03g32510 - SoyBase

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Report for Sequence Feature Glyma03g32510

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40234082
stop:	40241022
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g32510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G20340	AT	Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr2:8779804-8782490 FORWARD LENGTH=490	SoyBase	E_val: 0	ISS
GO:0006520	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0019752	GO-bp	Annotation by Michelle Graham. GO Biological Process: carboxylic acid metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004837	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tyrosine decarboxylase activity	SoyBase	N/A	ISS
GO:0016831	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
KOG0628	KOG	Aromatic-L-amino-acid/L-histidine decarboxylase	JGI		ISS
PTHR11999	Panther	GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE	JGI		ISS
PTHR11999:SF11	Panther	GLUTAMATE DECARBOXYLASE	JGI		ISS
PF00282	PFAM	Pyridoxal-dependent decarboxylase conserved domain	JGI		ISS
UniRef100_G7KYF4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tyrosine decarboxylase n=1 Tax=Medicago truncatula RepID=G7KYF4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JP86	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JP86_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g32510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g32510

Paralog	Evidence	Comments
Glyma19g35233	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g32510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g167900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g32510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g32510

Limit To All Plant Sequences

>Glyma03g32510.4   sequence type=transcript   gene model=Glyma03g32510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGCGACTGGGAAACGACGTTGGGCGTTGTGAATCTTGTGATCATCGAAAGTCACTGTAGTCTATTTTGTCTACAAAATATCTGGACTGACGGAGTAGAAACAACTGCACCACAAGGGGATTGGGGATAATTTCAATACGTCTAGTGTTTGCAAAAATGGAAGAAGAAAGTGCGTTGAGGCCGATGGACGCTGAGCAACTGAGAGAGCAGGCTCATAAGATGGTCGACTTCATTGCCGATTACTACAAAACCATCGAAGACTTCCCCGTTCTAAGCCAAGTTCAGCCAGGTTATCTTGGGAAGCTTTTACCAGATTCTGCACCTGATTCTCCTGAGTCATTGCAAAATGTTTTGGATGATGTGCAGGAAAAAATACTGCCAGGGGTGACGCACTGGCAAAGCCCAAATTATTTTGCGTATTTTCCTTCCAACAGTAGCATTGCTGGGTTTCTAGGAGAGATGCTCAGTGCGGGTCTTAACATCGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCAACTGAACTTGAGACGATTGTTCTGGATTGGCTTGCAAAGGCTTTCCAGCTGCCTGATTATTTCTATTCTAGTGGGAAAGGTGGTGGAGTTATACAGGGAACTGCAAGTGAAGCTGTACTAGTTGTCTTATTAGCTGCCCGTGACAAGATCTTAAGGAGGGTTGGAAGGAATGCCCTTCCTAAGCTTGTGATGTATGCATCTGATCAAACACACTCTGCTTTACTAAAAGCTTGCCAGATAGCAGGAATTAATCCAGAGCTATGCAGGTTGCTTAAAACTGATTCTTCCACAAATTATGCACTTTCTCCTGATGTGCTTTCTGAAGCAATTTCAAATGACATTGCTGGCGGTCTTGTACCCTTTTTCTTATGTGCTACTGTTGGTACCACTTCATCAACAGCTGTTGATCCTCTGCCTGCATTGGGAAAAATTGCCAAGACCAACAAACTTTGGTTTCATGTGGATGCTGCTTATGCTGGAAGTGCTTGTGTATGTCCAGAGTACCGCCACTGCATTGATGGTGTTGAAGAAGCCGACTCATTTAACATGAATGCACATAAATGGTTCCTGACTAACTTTGACTGTTCATTACTTTGGGTTAAGGACAGAAGTTCTCTGATTCAATCATTGTCTACAAATCCTGAATTTCTGAAAAACAAGGCCTCTCAAGGAAACATGGTCATAGATTACAAAGATTGGCAAATTCCTCTTGGACGTCGCTTTAGATCATTAAAACTGTGGATGGTGTTGCGACTCTATGGATTGGATGGTCTGCGAAGTCACATAAGAAACCACATTGAGTTGGCTGCTAACTTTGAGGAGCTTGTACGTCAGGACACAAGATTCAAGGTTGTTGCACCTCGCACGTTCTCTTTAGTTTGTTTTCGGCTGCTGCCCCATCCCAATTCTGCAGATCATGGGAATAAGCTAAATAGTGATCTACTCGACTCAGTAAATTCAACTGGAAATGCTTTCATAACACACACGGTTCTATCAGGGGAGTACATTCTACGTTTTGCAGTAGGAGCACCATTGACAGAAAGGAGGCATGTCAATATGGCATGGCAAATTTTGCAAGATAAAGCCACTGCTCTACTTGAGAGTTTATAGGATGAATCTGCTCTCAGCATCAGCAATTGCTTTTGTGGACATCCAATGTTTCCCAAGATTGCATTCATTTTATGATTTTTTCCTCTATACATGATTCCTTCTTTTTACACCATTGTCATGTGCTGTAAGCTTGTCAGAGATTTATTTTTTCTGAAGCAACAATGTTACTTTTATTACAAGTTGATCATTATTTCCAATTGTAGGCATCTCAGATCTCTGAGTAAAAGGAGAAACATTGTAAACAATTAAATAATCATTTTGGTTCATGAAAGATCAGGAGTCAGATATTTTAGTGTGTGATTGGTTTCATGGTGGATAGGTTCAGGATTTTGATTTTACTTCAGTCCAATGTGATTTCAGTAAAAATATAGATGTTTGATTATTGTTAATTAAA

Coding sequences of Glyma03g32510

Limit To All Plant Sequences

>Glyma03g32510.3   sequence type=CDS   gene model=Glyma03g32510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAAAGTGCGTTGAGGCCGATGGACGCTGAGCAACTGAGAGAGCAGGCTCATAAGATGGTCGACTTCATTGCCGATTACTACAAAACCATCGAAGACTTCCCCGTTCTAAGCCAAGTTCAGCCAGGTTATCTTGGGAAGCTTTTACCAGATTCTGCACCTGATTCTCCTGAGTCATTGCAAAATGTTTTGGATGATGTGCAGGAAAAAATACTGCCAGGGGTGACGCACTGGCAAAGCCCAAATTATTTTGCGTATTTTCCTTCCAACAGTAGCATTGCTGGGTTTCTAGGAGAGATGCTCAGTGCGGGTCTTAACATCGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCAACTGAACTTGAGACGATTGTTCTGGATTGGCTTGCAAAGGCTTTCCAGCTGCCTGATTATTTCTATTCTAGTGGGAAAGGTGGTGGAGTTATACAGGGAACTGCAAGTGAAGCTGTACTAGTTGTCTTATTAGCTGCCCGTGACAAGATCTTAAGGAGGGTTGGAAGGAATGCCCTTCCTAAGCTTGTGATGTATGCATCTGATCAAACACACTCTGCTTTACTAAAAGCTTGCCAGATAGCAGGAATTAATCCAGAGCTATGCAGGTTGCTTAAAACTGATTCTTCCACAAATTATGCACTTTCTCCTGATGTGCTTTCTGAAGCAATTTCAAATGACATTGCTGGCGGTCTTGTACCCTTTTTCTTATGTGCTACTGTTGGTACCACTTCATCAACAGCTGTTGATCCTCTGCCTGCATTGGGAAAAATTGCCAAGACCAACAAACTTTGGTTTCATGTGGATGCTGCTTATGCTGGAAGTGCTTGTGTATGTCCAGAGTACCGCCACTGCATTGATGGTGTTGAAGAAGCCGACTCATTTAACATGAATGCACATAAATGGTTCCTGACTAACTTTGACTGTTCATTACTTTGGGTTAAGGACAGAAGTTCTCTGATTCAATCATTGTCTACAAATCCTGAATTTCTGAAAAACAAGGCCTCTCAAGGAAACATGGTCATAGATTACAAAGATTGGCAAATTCCTCTTGGACGTCGCTTTAGATCATTAAAACTGTGGATGGTGTTGCGACTCTATGGATTGGATGGTCTGCGAAGTCACATAAGAAACCACATTGAGTTGGCTGCTAACTTTGAGGAGCTTGTACGTCAGGACACAAGATTCAAGGTTGTTGCACCTCGCACGTTCTCTTTAGTTTGTTTTCGGCTGCTGCCCCATCCCAATTCTGCAGATCATGGGAATAAGCTAAATAGTGATCTACTCGACTCAGTAAATTCAACTGGAAATGCTTTCATAACACACACGGTTCTATCAGGGGAGTACATTCTACGTTTTGCAGTAGGAGCACCATTGACAGAAAGGAGGCATGTCAATATGGCATGGCAAATTTTGCAAGATAAAGCCACTGCTCTACTTGAGAGTTTATAG

>Glyma03g32510.4   sequence type=CDS   gene model=Glyma03g32510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAAAGTGCGTTGAGGCCGATGGACGCTGAGCAACTGAGAGAGCAGGCTCATAAGATGGTCGACTTCATTGCCGATTACTACAAAACCATCGAAGACTTCCCCGTTCTAAGCCAAGTTCAGCCAGGTTATCTTGGGAAGCTTTTACCAGATTCTGCACCTGATTCTCCTGAGTCATTGCAAAATGTTTTGGATGATGTGCAGGAAAAAATACTGCCAGGGGTGACGCACTGGCAAAGCCCAAATTATTTTGCGTATTTTCCTTCCAACAGTAGCATTGCTGGGTTTCTAGGAGAGATGCTCAGTGCGGGTCTTAACATCGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCAACTGAACTTGAGACGATTGTTCTGGATTGGCTTGCAAAGGCTTTCCAGCTGCCTGATTATTTCTATTCTAGTGGGAAAGGTGGTGGAGTTATACAGGGAACTGCAAGTGAAGCTGTACTAGTTGTCTTATTAGCTGCCCGTGACAAGATCTTAAGGAGGGTTGGAAGGAATGCCCTTCCTAAGCTTGTGATGTATGCATCTGATCAAACACACTCTGCTTTACTAAAAGCTTGCCAGATAGCAGGAATTAATCCAGAGCTATGCAGGTTGCTTAAAACTGATTCTTCCACAAATTATGCACTTTCTCCTGATGTGCTTTCTGAAGCAATTTCAAATGACATTGCTGGCGGTCTTGTACCCTTTTTCTTATGTGCTACTGTTGGTACCACTTCATCAACAGCTGTTGATCCTCTGCCTGCATTGGGAAAAATTGCCAAGACCAACAAACTTTGGTTTCATGTGGATGCTGCTTATGCTGGAAGTGCTTGTGTATGTCCAGAGTACCGCCACTGCATTGATGGTGTTGAAGAAGCCGACTCATTTAACATGAATGCACATAAATGGTTCCTGACTAACTTTGACTGTTCATTACTTTGGGTTAAGGACAGAAGTTCTCTGATTCAATCATTGTCTACAAATCCTGAATTTCTGAAAAACAAGGCCTCTCAAGGAAACATGGTCATAGATTACAAAGATTGGCAAATTCCTCTTGGACGTCGCTTTAGATCATTAAAACTGTGGATGGTGTTGCGACTCTATGGATTGGATGGTCTGCGAAGTCACATAAGAAACCACATTGAGTTGGCTGCTAACTTTGAGGAGCTTGTACGTCAGGACACAAGATTCAAGGTTGTTGCACCTCGCACGTTCTCTTTAGTTTGTTTTCGGCTGCTGCCCCATCCCAATTCTGCAGATCATGGGAATAAGCTAAATAGTGATCTACTCGACTCAGTAAATTCAACTGGAAATGCTTTCATAACACACACGGTTCTATCAGGGGAGTACATTCTACGTTTTGCAGTAGGAGCACCATTGACAGAAAGGAGGCATGTCAATATGGCATGGCAAATTTTGCAAGATAAAGCCACTGCTCTACTTGAGAGTTTATAG

Predicted protein sequences of Glyma03g32510

Limit To All Plant Sequences

>Glyma03g32510.3   sequence type=predicted peptide   gene model=Glyma03g32510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEESALRPMDAEQLREQAHKMVDFIADYYKTIEDFPVLSQVQPGYLGKLLPDSAPDSPESLQNVLDDVQEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGLNIVGFSWITSPAATELETIVLDWLAKAFQLPDYFYSSGKGGGVIQGTASEAVLVVLLAARDKILRRVGRNALPKLVMYASDQTHSALLKACQIAGINPELCRLLKTDSSTNYALSPDVLSEAISNDIAGGLVPFFLCATVGTTSSTAVDPLPALGKIAKTNKLWFHVDAAYAGSACVCPEYRHCIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRSSLIQSLSTNPEFLKNKASQGNMVIDYKDWQIPLGRRFRSLKLWMVLRLYGLDGLRSHIRNHIELAANFEELVRQDTRFKVVAPRTFSLVCFRLLPHPNSADHGNKLNSDLLDSVNSTGNAFITHTVLSGEYILRFAVGAPLTERRHVNMAWQILQDKATALLESL*

>Glyma03g32510.4   sequence type=predicted peptide   gene model=Glyma03g32510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEESALRPMDAEQLREQAHKMVDFIADYYKTIEDFPVLSQVQPGYLGKLLPDSAPDSPESLQNVLDDVQEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGLNIVGFSWITSPAATELETIVLDWLAKAFQLPDYFYSSGKGGGVIQGTASEAVLVVLLAARDKILRRVGRNALPKLVMYASDQTHSALLKACQIAGINPELCRLLKTDSSTNYALSPDVLSEAISNDIAGGLVPFFLCATVGTTSSTAVDPLPALGKIAKTNKLWFHVDAAYAGSACVCPEYRHCIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRSSLIQSLSTNPEFLKNKASQGNMVIDYKDWQIPLGRRFRSLKLWMVLRLYGLDGLRSHIRNHIELAANFEELVRQDTRFKVVAPRTFSLVCFRLLPHPNSADHGNKLNSDLLDSVNSTGNAFITHTVLSGEYILRFAVGAPLTERRHVNMAWQILQDKATALLESL*

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