Glyma03g32420 - SoyBase

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Report for Sequence Feature Glyma03g32420

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40169802
stop:	40176327
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g32420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43960	AT	Annotation by Michelle Graham. TAIR10: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain \| chr5:17689154-17691653 REVERSE LENGTH=450	SoyBase	E_val: 2.00E-118	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006913	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0116	KOG	RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains	JGI		ISS
PTHR10693	Panther	RNA-BINDING RAS-GAP SH3 BINDING PROTEIN RELATED	JGI		ISS
PTHR10693:SF8	Panther	NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN /	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
PF02136	PFAM	Nuclear transport factor 2 (NTF2) domain	JGI		ISS
UniRef100_G7KXF8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ras GTPase-activating protein-binding protein n=1 Tax=Medicago truncatula RepID=G7KXF8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A62D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A62D related cluster n=1 Tax=unknown RepID=UPI000233A62D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g32420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g32420

Paralog	Evidence	Comments
Glyma19g35151	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g32420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g167100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g32420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g32420

Limit To All Plant Sequences

>Glyma03g32420.1   sequence type=CDS   gene model=Glyma03g32420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCTTCGTATCCCGGTTCCGTTAGTGCCGCGCAGGTTGGTTCCTACTTCGTGGGACAGTACTACCAGATTCTTCGCCAGCAACCGAATCTTGTTCACCAGTTTTACTCCGATTCCAGCAGCATGATTCGCGTCGACGGAGATTCAGTTGAAACCGCGCACGATGTGTTGCAAATTCATTCAATTGTATCGTTACTGAATTTTACTACGATTGAAATCAAGACAATTAATTCTCTTGACTCTTGGGATGGAGGTGTGCTTGTGATGGTCTCAGGTTTTGTGAAGATAAAGGATATCAGTGGGAAGCGGAAGTTTGTTCAAACTTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTAATGAATGATATGTTTCATTACATTGATGATGAAGTAACGTACCCAAATCTGGTACCAGTGGCATCTGAAACCATTGACACACAACCACATCTTTCTGCTTCACTTGCTGAGCCACCAGTTTCAGACTACGGTTTGGAGGAAGAAGCCAGGGAATATGTCAACTCAGTTCATATAGATGATGATCCAGTGGACGAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACAAGAAGAACTTGAAACCGAAATTGTGGAGGAGGAAACTCCCGTACAGGAGGCATCTCCACCAATTCATAGCATTGCACACACTGTCCAAGAACCCCCTGTTGCTCTTGTGGAAGAGTCCTTTGAGGAGCCTCCTAAGAAAACATATGCATCTATTTTACGAGTTTCCAAAGGGCAGCCAGTGTTGTCAGCTGCTCCACAGTATGCTCCACAACATTCTTTTAAAAGTGCCCCACCTCCTTCAGAGTTGAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCTGCATCTATGTATGTTCCTGAGTCAGGGATTGAGGCCGCAGAAGAAGGCTATGGACTAGAAGAAGAAGATGAAGTAACATCTGTCTATGTTAGAAACTTGCCCGCTAATGTTACTGAAGCAGAGATTGACCAGGAATTTAAGAATTTTGGCAGAATTAAGCCTGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTCTGCTATGCATTTGTAGAATTTGAAGACATTGTTGGTGTTCAAAATGCACTTCAGGCTTCTCCAATCCAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGTCGGTGCAGCTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGTTATCAAGCAGATGCTCCGAGAGGGCGTTTTGGTGGTAGGAGCATGGGAAGGGGAGGTAATCAGGATAGTTCAGACTACACCAGACTAAGAGGCGATGGTTATCTTCAGCGTGGTTCCCGATGA

Predicted protein sequences of Glyma03g32420

Limit To All Plant Sequences

>Glyma03g32420.1   sequence type=predicted peptide   gene model=Glyma03g32420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSYPGSVSAAQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDSVETAHDVLQIHSIVSLLNFTTIEIKTINSLDSWDGGVLVMVSGFVKIKDISGKRKFVQTFFLAPQEKGYFVMNDMFHYIDDEVTYPNLVPVASETIDTQPHLSASLAEPPVSDYGLEEEAREYVNSVHIDDDPVDEYSLPEHQQQLQEELETEIVEEETPVQEASPPIHSIAHTVQEPPVALVEESFEEPPKKTYASILRVSKGQPVLSAAPQYAPQHSFKSAPPPSELNHVAQPAVQQSSSASMYVPESGIEAAEEGYGLEEEDEVTSVYVRNLPANVTEAEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIVGVQNALQASPIQLAGRQVYIEERRPNSVGAARGGRRGRGRGSYQADAPRGRFGGRSMGRGGNQDSSDYTRLRGDGYLQRGSR*

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