Glyma03g32350 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g32350

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40111628
stop:	40118307
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g32350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28610	AT	Annotation by Michelle Graham. TAIR10: phosphate starvation response 1 \| chr4:14133164-14134951 REVERSE LENGTH=409	SoyBase	E_val: 7.00E-107	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0055063	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfate ion homeostasis	SoyBase	N/A	ISS
GO:0071486	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to high light intensity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7KXD8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator ARR n=2 Tax=Medicago truncatula RepID=G7KXD8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JP66	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JP66_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g32350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g32350

Paralog	Evidence	Comments
Glyma19g35080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g32350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g166400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g32350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g32350

Limit To All Plant Sequences

>Glyma03g32350.1   sequence type=CDS   gene model=Glyma03g32350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCACATTCTGCTTTCTCTATTGAAAGGTCAAATGCTAATGACATGGGGATGTCTGAAGTATTTCCTTCATCGTTGCCTGTCCTTCCATCGCCTCTAGAAGAGACATTCCCCAAATTATCTGATTCTCGACCAGCTTTTATGGAAAAAGAACTTAAAACAAAACCTTTTACACATTCAAGTCATTTAACTTCCAGCGGAGCAGTTGGGCATATGTTTTCATCTTCTCCTGGATATTCAACTGATCTTCATCACTCATCCTTTTCATCTTATGAAAAACAACCTAGAAATACTCATTTTATTTCACAACCATTGGGTAACATGGCTTCATTGCCATTATCTTATTCTTCAAATAGTGAACCAATACCTTCTACAACGTCAACCCCTTATTCCAATGGAAACAGTGTTTCCTGGCATACAGATTCTCTGCCTAGCTTTCTTGATTTCACAGCCAATACCTCCATTGATAATAGTCAAGTAGAAAACCGTGCCTGCAATATCATGGCAACTGAAGAGTATTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAATTAATCAGTGATGTTGATCCTTTGACTTCTAACTGGAATGATCTTCTTGCTGACAACATTCAAGATCTGGAACCAAAGGTCACAAAATCATCTTCACAACTTCCAATAGAACACCAATCTCAAAGCCATCAACAACTTTGTGCTTCATCTGGAGAAAATCGTGTTGGTGTTGCCCCAACTTCCTCAGCAAATTCTGCACCTGCCAAGCCACGGATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATACCATGTTAAAAGCCACCTACAGAAATACAGGACAGCTAGATATAGACCTGAGTCATCTGAAGGAGCTGCAGAGAAAAATCTAAGTCGAATCGAAGAGATGTCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGAGGTTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAGTGCAAACCTGGCATTGAAACATTTAAGGCATCATCATCTGTCATCGAGAGTCAATCTGGAGTGTCTTCTGATGCCATCAAAGATTCTCCAGCCAAAACTGAATCAGAAACCATCAAGGTGGACCACTGCAAGTCAGGAGCTGATCTGGCTAATGGCAGTACCACAGTTGAGGAAAGCTCATTGGAAGTGGCTGAGAAGCAGGATGCTCCTGAAATTCAAGCTTCCGACAATCCTGAGCAACATGCTAGTGAAGATAGTGGTAATGCCTCAAAGCGTCCAAGGACAGAGGAGTAA

Predicted protein sequences of Glyma03g32350

Limit To All Plant Sequences

>Glyma03g32350.1   sequence type=predicted peptide   gene model=Glyma03g32350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAHSAFSIERSNANDMGMSEVFPSSLPVLPSPLEETFPKLSDSRPAFMEKELKTKPFTHSSHLTSSGAVGHMFSSSPGYSTDLHHSSFSSYEKQPRNTHFISQPLGNMASLPLSYSSNSEPIPSTTSTPYSNGNSVSWHTDSLPSFLDFTANTSIDNSQVENRACNIMATEEYSKRNDWQEWADQLISDVDPLTSNWNDLLADNIQDLEPKVTKSSSQLPIEHQSQSHQQLCASSGENRVGVAPTSSANSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKNLSRIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGIETFKASSSVIESQSGVSSDAIKDSPAKTESETIKVDHCKSGADLANGSTTVEESSLEVAEKQDAPEIQASDNPEQHASEDSGNASKRPRTEE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain