SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04020 | AT | Annotation by Michelle Graham. TAIR10: breast cancer associated RING 1 | chr1:1036610-1040045 FORWARD LENGTH=714 | SoyBase | E_val: 4.00E-147 | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009934 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem structural organization | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0016444 | GO-bp | Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003713 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF501 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF00533 | PFAM | BRCA1 C Terminus (BRCT) domain | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| UniRef100_G7KXD0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PHD finger protein 11-like protein n=1 Tax=Medicago truncatula RepID=G7KXD0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JP60 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JP60_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g32260 not represented in the dataset |
Glyma03g32260 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g35010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g32260.3 sequence type=CDS gene model=Glyma03g32260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGACAGCTTAGGTCTGAAAGTTCGGTCTCTGAAACTGAGGGTCTGGCAAGGGATCTCAAGAGACAGAAGAATCTGGACTTTAAACCTGGAAAGGACCCTGGCGCACCATTGCCCACAAATGCTTCAATTGACTTGTGTCCAATTGGAAGGATCTGCTCATTTTGCCAATCCTCTAAAATCTCAGAGGTTACTGGACCAATGCTGCATTATGCAAATGGGAACTTAGTTACCGGAGATGCAGCCATGAAACCAAATGTTGTACCTGTGCATAGAATTTGCATTGACTGGGCACCACAAGTGTACTTTGATGGTGAAGTGGTTAAGAATTTGAAGGCAGAGGTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGCTGCTATGTCAAATCCTGTAGAAGAACTTATCATGTTCCTTGTGCAATGGACATCTCAGATTGCCGTTGGGATCATGAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGTGAGAAAATTAGGTCCAAGAAACAGGCAACACAGAAGCATCCCACTTTGTCTCATCTGCCATCTCACCACTCAAATCCTCTTGAAGCTTCCCATGATGATGATGTAAAATTAGTATTTTGTGGATCTGCTCTATCAAATGAAGAAAAGGTACTTTTGATCAATTATGCAAGCAAGGTTGGTGCTACTGTGACCAAGTTTTGGACCTCAAATGTCACTCATGTAATTGCAGCAACTGATGCACATGGAGCATGCTCCAGGACATTGAAAGTTCTGATGGCAATTCTAAATGGACGATGGGTTCTAAAAATGGATTGGATAAAAGCATGCATGGAAGAGGTAAATCCTGTGGAGGAAGAACCATATGAAATTAATCTTGACAACCAAGGGTGTCAAGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAATGAGCCAAAGCTATTCAATGGCTTAAAGTTTTATTTTTCTGGGGATTATGTGTCAACTTATAAGGAAGATCTCGAAGAATTAATTGAAGTGGGAGGAGGTACTGTTTTGAGAAGCAAGGAAGAATTGGAATCACAAAGACATGAATGCAAAGGAGATTCTTCACAGTTGCTGATTGTTTACAACCTTGATCCTCCTCAAGGATGCAAATTGGGGGAGGAAGTTTCAATTCTTTGGCAAAGGCTAAACGATGCAGAGGATTTAGCTGCTAACACTTTACAAGTCATTGGTCACACATGGATTCTTGAATCAATTGCTGCATATTGGAAACCTGATGGAAATCAAGAGTTAGACCTTTCACAAAACAGATTCTCTGTTCCAATTCCACCAACACTTTGGAATCTGACAAACATCCAAGTCACGAATCTTTTCTTCAATGAGTTCTCTGGAACCATTTCCACGGATATTGAAAACTTGACCTCACCAGAAATCTTTGATGTCAACACAAATAACTTGTATGGGGAGTTGCCAGAGACCATTCTTCAACTAAATGCCTTAAGAAATTTTTCTGTGTTCACCAATAATTTCACTGGCAGCATTCCCAGAGAATTTGGAAAGAGTAATCCTTCTTTGACTCATGTCTACCTTTCAAACAGCTTCTCTGGAGAACTGCATCCTGACTTGTGCAGTGATGGTAAGCTAGTTATTTTGGCAGTCAATAACAACAGCTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTTCATCACTATTTAGAGTCTGGCTTGATGATAATCAGTTAACTGGAAACATCGCAGATGCATTTGGAGTACTCCCAGCTGCAGAAATAAGTTGGTTGCTCGGTGATTGCAATCGCTTACCGAGTCTGAATTTAAGCCATAACAATCTATCCGGGGAGATACCATTTGAACTTGGCAATCTGTTCTCAGCCCAAATCATGTTGGACCTCAGCAGCAACTCTCTTTCTGGAGCTATCCCCCAAAACCTTGAGAAGTTAGCATCATTGGAGATTCTCAATGTCTCACACAACCATCTATCAGGGACAATCCCACAATCATTTTCCAGCATGCTCAGCCTTCAGTCTATTGATTTTTCTTACAACAACTTGAGTGGTTCAATCTCCACAGGTCGTGCTTTCCTGACAGCAACAGCTGAAGCCTATGTTGGCAACTCAGTGTTTTTGCCAGACAAATCCAGAGGGGTTAACAAAAAGGTTCTTCTAGGTGTTATCATACCAGTTTGTGGCTTATTTATTGGGATGATTTGTGTTGGAATCCTGCTAAGCTGGCGGCACTCCAAAAAAAGCCTTGATGAAGAGTCCAGAATTGAAAAAAGTAATGAGTCTATTAGCATGCTGTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCAATGGCTTCAATGACATGTACTGCATTGGAAAAGGAGCATTCGGAAGTGTTTATAGAGCACAAGTACTCACAGACCAAGTTGTTGCTGTTAAAAGGCTCAACATATCAGACTCTGATGACATTCCAGCAGTGAATCGCCAGAGCTTTCAGAATGAGATAGAATCACTTACTGAAGTGAGGCACCACAATATAATAAAGTTTTATGGGTTCTGTTCTTGCAGGGGACAAATGTTCTTGGTTTATGAACATGTACACAGAGGAAGTTTGGGGAAAGTATTGTATGGAGAGGAAGGAAAATCGGAGCTAAGTTGGGCCACAATGCTGAAAATTGTGCAGGGAATAGCACATGCAATTTCATACCTGCACTCTGACTGCTCCCCACCAATTGTGCACCGGGACGTAACACTGAATAGCATACTACTAGACTCCGACTTAGAACCTCGTCTTGCAGTTTCCAGCACTGCAAAGCTGTTAAGCTCAAACACTTCAACATGGACGTCAGTTGCTGGATCCTATGGCTACATGACTCCAGAACTAGCTCAAACAAAGAGGGTCACTGACAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTTTTGGAGATAATGATGGGAAAGCATCCTGGAGAACTCTTGTTTACAATGTCTTCAAACAAGTCTTTGTCATCAACAGAGGAACCACCCGTGCTACTGAAGGATGTGCTTGACCAAAGGCTTCGACCTCCAACGGGCAATTTAGCAGAAGCAGTAGTGTTCACGGTGACCATGGCTATGGCATACACACGTGCGGCTCCAGAGTCCAGACCCATGATGCGTCCTGTGGCACAACAACTGGCATTGGCTACTAAGCAGCCTTGTCTTACAGAGCCATTTGGCATGATAACCGTAAGCAAGCTTACAGCAGGGTTCCACAAATAG
>Glyma03g32260.3 sequence type=predicted peptide gene model=Glyma03g32260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGQLRSESSVSETEGLARDLKRQKNLDFKPGKDPGAPLPTNASIDLCPIGRICSFCQSSKISEVTGPMLHYANGNLVTGDAAMKPNVVPVHRICIDWAPQVYFDGEVVKNLKAEVARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISDCRWDHEDFLLLCPVHSNVKFPCEKIRSKKQATQKHPTLSHLPSHHSNPLEASHDDDVKLVFCGSALSNEEKVLLINYASKVGATVTKFWTSNVTHVIAATDAHGACSRTLKVLMAILNGRWVLKMDWIKACMEEVNPVEEEPYEINLDNQGCQGGPKAGRLRALANEPKLFNGLKFYFSGDYVSTYKEDLEELIEVGGGTVLRSKEELESQRHECKGDSSQLLIVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAAYWKPDGNQELDLSQNRFSVPIPPTLWNLTNIQVTNLFFNEFSGTISTDIENLTSPEIFDVNTNNLYGELPETILQLNALRNFSVFTNNFTGSIPREFGKSNPSLTHVYLSNSFSGELHPDLCSDGKLVILAVNNNSFSGPLPKSLRNCSSLFRVWLDDNQLTGNIADAFGVLPAAEISWLLGDCNRLPSLNLSHNNLSGEIPFELGNLFSAQIMLDLSSNSLSGAIPQNLEKLASLEILNVSHNHLSGTIPQSFSSMLSLQSIDFSYNNLSGSISTGRAFLTATAEAYVGNSVFLPDKSRGVNKKVLLGVIIPVCGLFIGMICVGILLSWRHSKKSLDEESRIEKSNESISMLWGRDGKFTFSDLVKATNGFNDMYCIGKGAFGSVYRAQVLTDQVVAVKRLNISDSDDIPAVNRQSFQNEIESLTEVRHHNIIKFYGFCSCRGQMFLVYEHVHRGSLGKVLYGEEGKSELSWATMLKIVQGIAHAISYLHSDCSPPIVHRDVTLNSILLDSDLEPRLAVSSTAKLLSSNTSTWTSVAGSYGYMTPELAQTKRVTDKCDVYSFGVVVLEIMMGKHPGELLFTMSSNKSLSSTEEPPVLLKDVLDQRLRPPTGNLAEAVVFTVTMAMAYTRAAPESRPMMRPVAQQLALATKQPCLTEPFGMITVSKLTAGFHK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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