SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G23380 | AT | Annotation by Michelle Graham. TAIR10: ROP-interactive CRIB motif-containing protein 5 | chr3:8373947-8374708 FORWARD LENGTH=193 | SoyBase | E_val: 2.00E-20 | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0016324 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF00786 | PFAM | P21-Rho-binding domain | JGI | ISS | |
| UniRef100_B9HSG6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HSG6_POPTR | SoyBase | E_val: 2.00E-18 | ISS |
| UniRef100_I6QKY5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ROP-interactive CRIB motif-containing protein B n=1 Tax=Helianthus annuus RepID=I6QKY5_HELAN | SoyBase | E_val: 3.00E-18 | ISS |
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Glyma03g32191 not represented in the dataset |
Glyma03g32191 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g34945 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g164900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g32191.1 sequence type=CDS gene model=Glyma03g32191 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAACAACAATAAGGTGAAGGGCCTCCTTAAAGGCCTAAGATTCATTTCTCAGATATTCGATACCGATGAAAAAGACTCAGAAATTCAGATTAGTAATCCCACAGATGTAAGGCATGTGGGGCATATTGGATTGGATGGTCACGATGGTCCCTCTGAAAATGATCCCAGCTGGATGAACGAGTTTAAACCCGATGATTCAGTCCAAAGGACCTCTCAAGATTCAAATGAGTTTCCCAAATCATCTAAGCGGCAAACAAAATCAATGGGGAACATAAGAGAGTCTCATGCAAAGGAAAAATCAGACAGGAGGCCAAGGCCACATAAAAAGTCATCCAAAACTAATTCAGACCAAAATGATTCATGCAATGGGGACACGGATTCACTCCAACAACAACAAGGGAATGATTTTCCACCTAAAAAGTCTCGTCCCAAGATGTCAAAAGATGGTTCCAATAATGTTGGTGGTGACTCATCCAAAACCAGATCAAAACCTCATCATCATCATCATCATCATTCTAGAAACTCATACTCCAATAATAATCAAGAAGGCCATGCTAGACACAGTTCCAAGACTAGGACCACACACGGGTCCTTTGAAGAAGATGCACATTCTAGGAACAAACACGGGTCCTTTGAAGAAGAAGAACAATTTCAAAGACGCTCTTGTGAAAATATACTGAAAAGTTACCCAAATTAG
>Glyma03g32191.1 sequence type=predicted peptide gene model=Glyma03g32191 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNNNKVKGLLKGLRFISQIFDTDEKDSEIQISNPTDVRHVGHIGLDGHDGPSENDPSWMNEFKPDDSVQRTSQDSNEFPKSSKRQTKSMGNIRESHAKEKSDRRPRPHKKSSKTNSDQNDSCNGDTDSLQQQQGNDFPPKKSRPKMSKDGSNNVGGDSSKTRSKPHHHHHHHSRNSYSNNNQEGHARHSSKTRTTHGSFEEDAHSRNKHGSFEEEEQFQRRSCENILKSYPN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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