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Report for Sequence Feature Glyma03g32160

Feature Type:gene_model
Chromosome:Gm03
Start:39970218
stop:39977569
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g32160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G20470AT Annotation by Michelle Graham. TAIR10: AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr2:8826277-8829497 REVERSE LENGTH=569 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0009827GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0605 KOG NDR and related serine/threonine kinases JGI ISS
PTHR24358Panther SERINE/THREONINE-PROTEIN KINASE 38 JGI ISS
PTHR24358:SF32Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00433PFAM Protein kinase C terminal domain JGI ISS
UniRef100_B9SV26UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SV26_RICCO SoyBaseE_val: 0ISS
UniRef100_I1JP50UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JP50_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g32160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g32160
ParalogEvidenceComments
Glyma19g34920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g32160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g164600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g32160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g32160
>Glyma03g32160.1   sequence type=CDS   gene model=Glyma03g32160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTGCGAGAAGTTGGTTACAAAAATTTCAACCACGTGATAAATTGAGGGCCTCTACAAGGAACAAAGATGATACTAATGGCACAAATGAAATTCCAAATGTGCCTATGGATGATACATCTCTTTCCAATGTCACAAAACAAAAGGTTACGGCAGCCAAACAATACATTGAGAACCACTACAAGGAACAAATGAAAAGCCTTCAAGAGAGGAAGGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCTGACGCTGATGTCTCCGAGGAAGATCAAAATAACCTACTTAAATTTTTAGAGAAAAAAGAAACTGAATATATGCGTCTTCAAAGGCACAAAATGGGTGTTGACGATTTTGAGTTACTAACTATGATTGGAAAAGGTGCATTTGGGGAGGTTAGAGTCTGTAAGGAAAAGGCTACGGATCATGTATATGCAATGAAAAAGTTAAAGAAATCAGAAATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAAAGGAATCTCCTAGCAGAGGTTGACAGCAATTGCATAGTTAAACTTTATTGTTCTTTTCAAGATGACGAATATTTGTATCTTATTATGGAATATCTACCGGGTGGAGATATGATGACTCTACTCATGAGAAAGGATACCTTGACTGAAGATGAAGCTCGATTTTATGTAGGAGAAACAATTTTAGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCTGACAACTTGTTACTTGATAAATATGGACATTTGAGACTATCAGACTTTGGACTATGTAAACCATTAGACTGTAGTACACTTGAAGAAACAGATTTCACTACAGGTCAAAATGCGAATGGGTCTACACAAAATAATGAACATGTAGCTCCAAAACGCACACAACAAGAAAAATTGCAACATTGGCAGAAAAATAGAAGGACACTTGCGTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAAAAGGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTAGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGCAGGAAGATAGTAAATTGGAAATCTCACTTAAGATTTCCTGAAGAAGCAAGGTTATCTCCAGAAGCTAAAGATCTTATAAGTAAGCTTTTGTGTGATGTTAATCAGAGGTTGGGTTCAAATGGTGCAGATGAAATAAAGGCTCATCCATTCTTCAACGGTGTTGAATGGGATAAATTGTATCAAATGGAAGCTGCCTTTATTCCTGAGGTCAATGATGAGTTAGATACTCAAAATTTTGAAAAGTTTGAAGAGTCTGAGAGTCAAACTCACTCATCATCAAGAGTTAGTCCATGGAGGAAGATGTTTTCTTCTAAAGACTTGAATTTTGTTGGATACACATACAAGAACTTTGAAATTGTCAACGACTATCAAGTTCCCGGAATGGCTGAATTGAGGAAGAAAAATTCAAAAGCAAAGAAGCCATCTGTCAAGTCCTTATTTGATGGTGAAAGTGAGGCATTTGAGGCTTCAGAATCAACTACAAGCATAACTAGGAAGTATGATGATCTACCTCCCATGTCAGAATAG
Predicted protein sequences of Glyma03g32160
>Glyma03g32160.1   sequence type=predicted peptide   gene model=Glyma03g32160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSARSWLQKFQPRDKLRASTRNKDDTNGTNEIPNVPMDDTSLSNVTKQKVTAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCKEKATDHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETILAIESIHKHNYIHRDIKPDNLLLDKYGHLRLSDFGLCKPLDCSTLEETDFTTGQNANGSTQNNEHVAPKRTQQEKLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLRFPEEARLSPEAKDLISKLLCDVNQRLGSNGADEIKAHPFFNGVEWDKLYQMEAAFIPEVNDELDTQNFEKFEESESQTHSSSRVSPWRKMFSSKDLNFVGYTYKNFEIVNDYQVPGMAELRKKNSKAKKPSVKSLFDGESEAFEASESTTSITRKYDDLPPMSE*






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