Glyma03g32140 - SoyBase

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Report for Sequence Feature Glyma03g32140

Feature Type:	gene_model
Chromosome:	Gm03
Start:	39956053
stop:	39964276
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g32140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21150	AT	Annotation by Michelle Graham. TAIR10: ribophorin II (RPN2) family protein \| chr4:11278646-11283599 FORWARD LENGTH=691	SoyBase	E_val: 0	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0018279	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation via asparagine	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008250	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: oligosaccharyltransferase complex	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004579	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	SoyBase	N/A	ISS
KOG2447	KOG	Oligosaccharyltransferase, delta subunit (ribophorin II)	JGI		ISS
PTHR12640	Panther	RIBOPHORIN II	JGI		ISS
PF05817	PFAM	Oligosaccharyltransferase subunit Ribophorin II	JGI		ISS
UniRef100_B9SV32	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribophorin II, putative n=1 Tax=Ricinus communis RepID=B9SV32_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JP48	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JP48_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g32140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g32140

Paralog	Evidence	Comments
Glyma19g34900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g32140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g164400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g32140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g32140

Limit To All Plant Sequences

>Glyma03g32140.4   sequence type=transcript   gene model=Glyma03g32140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAACATTTTCTATCAGTAAAAGTTGATTCCTGTTGTTCATGTGAGATAATATGCAAGTAGTACCCTGGTCTAAAACTTTATTGTAAAAAAAAAAAAACATTTTCTGATTTTGCGAAGATAGGCATAGTTAAAACGTGGATTCAAGGATATTATTGGAAACTAAAATTAATGCCACGACCAAGACGACGACGACTTCTAGTTCAGTTGCACTCAAGCCACTCCTCACTGGAAGTCGAAGTCTTCGCTTGCCAATTGCATTTCTTCTCAGCTTCTTGCTGCTTCCGCGAATGGCCCGAAACCTAGGAGGATTACTGGCGCTACTTTTCGCTGTTTCGATCTGCGGAGCCGTCACGATTCCCGGCCCCGTCTCCGATGCTCACCGTTCCGCCGCGTTAGAGCTCTTCGATGGATCGTTTTCAAGTTTAGAAGAGGCCTATGAGGCACTAAGAGTTTTTGAGATTCTTACGATTGGGAATAAGCCTGATGTGAGCACAACGACTTGCAAGAAAGTAGTGGAAAACCTTGGGTCGTCATCGCCTGTGAAGGATTTGTTCTATGCGTTAAAGGTTAATGACATATTAAAATGCAAGGTTAATGGGGATGTTTTCAAGGATATTGCTTTGAGACTTAAAGCCACTGTCAATGATGCGAGTACTTTGGTTGAGATGTACTATTCAATAGGAAGTTTGGTTCTTATAAAGGACCAGGCTTCTGATGTTGATGTGCTTCTTACTGATGCCGATGGATCCTTCCATTCAATCAAGGCTCTGAGCCAAAGTGATGGAAGGTGGCGTTATAGTTCTAATAATCCAGAGTCTAGTACCTATGCTGCTGGATTAGCACTTGAAGCACTTGCTGGAGTGATCTCATTAGCATCTTCTGAAATTGATCAGTCTAGGGTGAATACAGTGAAAAATGATATATTGAAGCTTTTCGACAGCATTGAGAAATATGATGATGGAACATTCTATTTTGATGAGAAATTTGTTGGTGGACGTGAGCATCAGGGTTCTCTTTCCACAACTTCTTCTGTTGTTCGAGGGGTTACAGCATTTGCTGCTGTAACTTCTGGAAAAATAAATCTTCCAGGGGATAAAATATTGGGTTTAGCAAATTTTTTCCTGGGAATTGGAATCCCAGGAGATGCCAAGGACTTCTTCAATCAAGTTGAATCATTAGCTCTTCTAGAGAACAACAAGGTTTCGATCCCATTGGTACTGTCACTTCCTGCAACGGTTTATTCATTATCCAAAAAAGATCAGCTCAAGGTTAGGGTGAACACTGTACTTGGTTCAGCTGCACCACCTTTAACAGTTAAGCTTGTGCAAGCTTTCCGCTCTAACGCTAAAGATTCAGCTATTGAGAGCAAGGAGCTCCAATATGATCAAAATAATGGAATTCATTTCTTGGAAGCTTTCCCAGACAATGTAGATGTGGGAACTTATGTGTTTGTTTTTGAGATTGCACTTCACGATTCTGCTGGTGAAAAAGTTTATGCTACTGGAGGCCAAATTCATGTACCAATATATGTCACTGGCATTATTAAAGTCAGCAATGCTGAAATTGCTGTTCTTGACAGTGATCTTGGAAGTGTTGAAACCCAGAAAACGCTAGATTTGGCTGGAAATGATGATGTTTCACTCTCAGCTAACCACTTGCAAAAGTTGCGCTTTTCTTTCCAGTTGACAACACCTCACGGTCATGCTTTTAAGCCTCATCAGGCATTTTTCAAGTTGAAGCATGAGACAAAGCATGAACACATCTTTGTGGTTGGAAATACTGGCAGGAAGTTTGAGATTATTCTTGATTTTCTTGGTTTGGTGGAGAAATTTTATTACCTCTCTGGCAGATATGACATTGAGCTGACTGTTGGGGATACTGTCATGGAGAACTCTTTCTTACGGCTGCTTGGTGAAGTTGATTTAGATCTTCCCGAAGCACCTGAGAAGGCAGCCCGTCTTCCTCCACTCCCTGTCGATCCTTACTCAAGATATGGGCCCAAAGCCGAGATAGCCCACTTATTCAGGGCTCCAGAAAAGCGACCACCCCAGGAACTCTCTCTTACTTTCTTGGGTTTGATCCTTCTGCCATTTATTGGCTTTTTAGTTGGGCTGTTACGCCTGGGAGTGAACTTGAAGAATTTTCCTTCTTCAGCTGTACCTGCTACATATGCCTTCTTATTCCATCTTGGCATTGCTGCAGTTCTATTGCTTTATGTACTTTTCTGGTTGAAGCTGGACTTGTTCACTACACTCAAAACTGTAGGATTTTTGGGAGCTTTTCTGTTGTTTGTGGGACACAGAATTCTTTCCCATCTCGCTTCAACATCATCTAAGTTGAAGTCTGCATGAGTAAAAGGAAGATTATCTATTTATAAAGACATGACATGATAATGTGTTTTTCCTTGAAAAAATGATACTAATCCAATTTTGTAGGACTTTGTTGTACTAGTTCGTAACGAATTTAGAGCTCAATTATATCAAGAGAAAAGTTTTATCATGATCTCGCCTTATCTTGATGAAAGTCATTGACATACACCACTATGCTTGACATTTTTTTTGGCCCCCAAACACCATATGCTATCATGGTCCATATCATTTTTGGCCGGTGGATATAGATTTGGCTTAGGCTCCTTTGGGAACACGTGGATGGATCGTGTAAATGCGATGAAGTGATTTGTTTCAAGATGTTCTTCTAAGTTTGCTATGATAGTCCTTCCTGTGTGCTCAAATTGTTGCCAGCACGAACATGCAGCTATGATAAATTCGAATCCTGCCCTCCCAAATCCCCTTCCCTCGCCCCTTAGACCCAAAATAGATGTTATGATAAAGAATGTTTGACTTTAAGAATTAGATACTACCTAACTAGTTGTAAAGAATCATGATTGGCACAACTATTTTTGGTAGACTAAATTTGTGATTTTAATTAGTTTATGTATTTAAATGTGGTTGGCCAAGTTTCATAGATAAAGATGTGATTGACCAAACAATAGTGCTATTAGACACGGGTAAGGATTCAGTTATCTA

Coding sequences of Glyma03g32140

Limit To All Plant Sequences

>Glyma03g32140.3   sequence type=CDS   gene model=Glyma03g32140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCGAAACCTAGGAGGATTACTGGCGCTACTTTTCGCTGTTTCGATCTGCGGAGCCGTCACGATTCCCGGCCCCGTCTCCGATGCTCACCGTTCCGCCGCGTTAGAGCTCTTCGATGGATCGTTTTCAAGTTTAGAAGAGGCCTATGAGGCACTAAGAGTTTTTGAGATTCTTACGATTGGGAATAAGCCTGATGTGAGCACAACGACTTGCAAGAAAGTAGTGGAAAACCTTGGGTCGTCATCGCCTGTGAAGGATTTGTTCTATGCGTTAAAGGTTAATGACATATTAAAATGCAAGGTTAATGGGGATGTTTTCAAGGATATTGCTTTGAGACTTAAAGCCACTGTCAATGATGCGAGTACTTTGGTTGAGATGTACTATTCAATAGGAAGTTTGGTTCTTATAAAGGACCAGGCTTCTGATGTTGATGTGCTTCTTACTGATGCCGATGGATCCTTCCATTCAATCAAGGCTCTGAGCCAAAGTGATGGAAGGTGGCGTTATAGTTCTAATAATCCAGAGTCTAGTACCTATGCTGCTGGATTAGCACTTGAAGCACTTGCTGGAGTGATCTCATTAGCATCTTCTGAAATTGATCAGTCTAGGGTGAATACAGTGAAAAATGATATATTGAAGCTTTTCGACAGCATTGAGAAATATGATGATGGAACATTCTATTTTGATGAGAAATTTGTTGGTGGACGTGAGCATCAGGGTTCTCTTTCCACAACTTCTTCTGTTGTTCGAGGGGTTACAGCATTTGCTGCTGTAACTTCTGGAAAAATAAATCTTCCAGGGGATAAAATATTGGGTTTAGCAAATTTTTTCCTGGGAATTGGAATCCCAGGAGATGCCAAGGACTTCTTCAATCAAGTTGAATCATTAGCTCTTCTAGAGAACAACAAGGTTTCGATCCCATTGGTACTGTCACTTCCTGCAACGGTTTATTCATTATCCAAAAAAGATCAGCTCAAGGTTAGGGTGAACACTGTACTTGGTTCAGCTGCACCACCTTTAACAGTTAAGCTTGTGCAAGCTTTCCGCTCTAACGCTAAAGATTCAGCTATTGAGAGCAAGGAGCTCCAATATGATCAAAATAATGGAATTCATTTCTTGGAAGCTTTCCCAGACAATGTAGATGTGGGAACTTATGTGTTTGTTTTTGAGATTGCACTTCACGATTCTGCTGGTGAAAAAGTTTATGCTACTGGAGGCCAAATTCATGTACCAATATATGTCACTGGCATTATTAAAGTCAGCAATGCTGAAATTGCTGTTCTTGACAGTGATCTTGGAAGTGTTGAAACCCAGAAAACGCTAGATTTGGCTGGAAATGATGATGTTTCACTCTCAGCTAACCACTTGCAAAAGTTGCGCTTTTCTTTCCAGTTGACAACACCTCACGGTCATGCTTTTAAGCCTCATCAGGCATTTTTCAAGTTGAAGCATGAGACAAAGCATGAACACATCTTTGTGGTTGGAAATACTGGCAGGAAGTTTGAGATTATTCTTGATTTTCTTGGTTTGGTGGAGAAATTTTATTACCTCTCTGGCAGATATGACATTGAGCTGACTGTTGGGGATACTGTCATGGAGAACTCTTTCTTACGGCTGCTTGGTGAAGTTGATTTAGATCTTCCCGAAGCACCTGAGAAGGCAGCCCGTCTTCCTCCACTCCCTGTCGATCCTTACTCAAGATATGGGCCCAAAGCCGAGATAGCCCACTTATTCAGGGCTCCAGAAAAGCGACCACCCCAGGAACTCTCTCTTACTTTCTTGGGTTTGATCCTTCTGCCATTTATTGGCTTTTTAGTTGGGCTGTTACGCCTGGGAGTGAACTTGAAGAATTTTCCTTCTTCAGCTGTACCTGCTACATATGCCTTCTTATTCCATCTTGGCATTGCTGCAGTTCTATTGCTTTATGTACTTTTCTGGTTGAAGCTGGACTTGTTCACTACACTCAAAACTGTAGGATTTTTGGGAGCTTTTCTGTTGTTTGTGGGACACAGAATTCTTTCCCATCTCGCTTCAACATCATCTAAGTTGAAGTCTGCATGA

>Glyma03g32140.4   sequence type=CDS   gene model=Glyma03g32140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCGAAACCTAGGAGGATTACTGGCGCTACTTTTCGCTGTTTCGATCTGCGGAGCCGTCACGATTCCCGGCCCCGTCTCCGATGCTCACCGTTCCGCCGCGTTAGAGCTCTTCGATGGATCGTTTTCAAGTTTAGAAGAGGCCTATGAGGCACTAAGAGTTTTTGAGATTCTTACGATTGGGAATAAGCCTGATGTGAGCACAACGACTTGCAAGAAAGTAGTGGAAAACCTTGGGTCGTCATCGCCTGTGAAGGATTTGTTCTATGCGTTAAAGGTTAATGACATATTAAAATGCAAGGTTAATGGGGATGTTTTCAAGGATATTGCTTTGAGACTTAAAGCCACTGTCAATGATGCGAGTACTTTGGTTGAGATGTACTATTCAATAGGAAGTTTGGTTCTTATAAAGGACCAGGCTTCTGATGTTGATGTGCTTCTTACTGATGCCGATGGATCCTTCCATTCAATCAAGGCTCTGAGCCAAAGTGATGGAAGGTGGCGTTATAGTTCTAATAATCCAGAGTCTAGTACCTATGCTGCTGGATTAGCACTTGAAGCACTTGCTGGAGTGATCTCATTAGCATCTTCTGAAATTGATCAGTCTAGGGTGAATACAGTGAAAAATGATATATTGAAGCTTTTCGACAGCATTGAGAAATATGATGATGGAACATTCTATTTTGATGAGAAATTTGTTGGTGGACGTGAGCATCAGGGTTCTCTTTCCACAACTTCTTCTGTTGTTCGAGGGGTTACAGCATTTGCTGCTGTAACTTCTGGAAAAATAAATCTTCCAGGGGATAAAATATTGGGTTTAGCAAATTTTTTCCTGGGAATTGGAATCCCAGGAGATGCCAAGGACTTCTTCAATCAAGTTGAATCATTAGCTCTTCTAGAGAACAACAAGGTTTCGATCCCATTGGTACTGTCACTTCCTGCAACGGTTTATTCATTATCCAAAAAAGATCAGCTCAAGGTTAGGGTGAACACTGTACTTGGTTCAGCTGCACCACCTTTAACAGTTAAGCTTGTGCAAGCTTTCCGCTCTAACGCTAAAGATTCAGCTATTGAGAGCAAGGAGCTCCAATATGATCAAAATAATGGAATTCATTTCTTGGAAGCTTTCCCAGACAATGTAGATGTGGGAACTTATGTGTTTGTTTTTGAGATTGCACTTCACGATTCTGCTGGTGAAAAAGTTTATGCTACTGGAGGCCAAATTCATGTACCAATATATGTCACTGGCATTATTAAAGTCAGCAATGCTGAAATTGCTGTTCTTGACAGTGATCTTGGAAGTGTTGAAACCCAGAAAACGCTAGATTTGGCTGGAAATGATGATGTTTCACTCTCAGCTAACCACTTGCAAAAGTTGCGCTTTTCTTTCCAGTTGACAACACCTCACGGTCATGCTTTTAAGCCTCATCAGGCATTTTTCAAGTTGAAGCATGAGACAAAGCATGAACACATCTTTGTGGTTGGAAATACTGGCAGGAAGTTTGAGATTATTCTTGATTTTCTTGGTTTGGTGGAGAAATTTTATTACCTCTCTGGCAGATATGACATTGAGCTGACTGTTGGGGATACTGTCATGGAGAACTCTTTCTTACGGCTGCTTGGTGAAGTTGATTTAGATCTTCCCGAAGCACCTGAGAAGGCAGCCCGTCTTCCTCCACTCCCTGTCGATCCTTACTCAAGATATGGGCCCAAAGCCGAGATAGCCCACTTATTCAGGGCTCCAGAAAAGCGACCACCCCAGGAACTCTCTCTTACTTTCTTGGGTTTGATCCTTCTGCCATTTATTGGCTTTTTAGTTGGGCTGTTACGCCTGGGAGTGAACTTGAAGAATTTTCCTTCTTCAGCTGTACCTGCTACATATGCCTTCTTATTCCATCTTGGCATTGCTGCAGTTCTATTGCTTTATGTACTTTTCTGGTTGAAGCTGGACTTGTTCACTACACTCAAAACTGTAGGATTTTTGGGAGCTTTTCTGTTGTTTGTGGGACACAGAATTCTTTCCCATCTCGCTTCAACATCATCTAAGTTGAAGTCTGCATGA

Predicted protein sequences of Glyma03g32140

Limit To All Plant Sequences

>Glyma03g32140.3   sequence type=predicted peptide   gene model=Glyma03g32140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARNLGGLLALLFAVSICGAVTIPGPVSDAHRSAALELFDGSFSSLEEAYEALRVFEILTIGNKPDVSTTTCKKVVENLGSSSPVKDLFYALKVNDILKCKVNGDVFKDIALRLKATVNDASTLVEMYYSIGSLVLIKDQASDVDVLLTDADGSFHSIKALSQSDGRWRYSSNNPESSTYAAGLALEALAGVISLASSEIDQSRVNTVKNDILKLFDSIEKYDDGTFYFDEKFVGGREHQGSLSTTSSVVRGVTAFAAVTSGKINLPGDKILGLANFFLGIGIPGDAKDFFNQVESLALLENNKVSIPLVLSLPATVYSLSKKDQLKVRVNTVLGSAAPPLTVKLVQAFRSNAKDSAIESKELQYDQNNGIHFLEAFPDNVDVGTYVFVFEIALHDSAGEKVYATGGQIHVPIYVTGIIKVSNAEIAVLDSDLGSVETQKTLDLAGNDDVSLSANHLQKLRFSFQLTTPHGHAFKPHQAFFKLKHETKHEHIFVVGNTGRKFEIILDFLGLVEKFYYLSGRYDIELTVGDTVMENSFLRLLGEVDLDLPEAPEKAARLPPLPVDPYSRYGPKAEIAHLFRAPEKRPPQELSLTFLGLILLPFIGFLVGLLRLGVNLKNFPSSAVPATYAFLFHLGIAAVLLLYVLFWLKLDLFTTLKTVGFLGAFLLFVGHRILSHLASTSSKLKSA*

>Glyma03g32140.4   sequence type=predicted peptide   gene model=Glyma03g32140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARNLGGLLALLFAVSICGAVTIPGPVSDAHRSAALELFDGSFSSLEEAYEALRVFEILTIGNKPDVSTTTCKKVVENLGSSSPVKDLFYALKVNDILKCKVNGDVFKDIALRLKATVNDASTLVEMYYSIGSLVLIKDQASDVDVLLTDADGSFHSIKALSQSDGRWRYSSNNPESSTYAAGLALEALAGVISLASSEIDQSRVNTVKNDILKLFDSIEKYDDGTFYFDEKFVGGREHQGSLSTTSSVVRGVTAFAAVTSGKINLPGDKILGLANFFLGIGIPGDAKDFFNQVESLALLENNKVSIPLVLSLPATVYSLSKKDQLKVRVNTVLGSAAPPLTVKLVQAFRSNAKDSAIESKELQYDQNNGIHFLEAFPDNVDVGTYVFVFEIALHDSAGEKVYATGGQIHVPIYVTGIIKVSNAEIAVLDSDLGSVETQKTLDLAGNDDVSLSANHLQKLRFSFQLTTPHGHAFKPHQAFFKLKHETKHEHIFVVGNTGRKFEIILDFLGLVEKFYYLSGRYDIELTVGDTVMENSFLRLLGEVDLDLPEAPEKAARLPPLPVDPYSRYGPKAEIAHLFRAPEKRPPQELSLTFLGLILLPFIGFLVGLLRLGVNLKNFPSSAVPATYAFLFHLGIAAVLLLYVLFWLKLDLFTTLKTVGFLGAFLLFVGHRILSHLASTSSKLKSA*

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