Glyma03g32040 - SoyBase

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Report for Sequence Feature Glyma03g32040

Feature Type:	gene_model
Chromosome:	Gm03
Start:	39846700
stop:	39849401
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g32040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06210	AT	Annotation by Michelle Graham. TAIR10: ENTH/VHS/GAT family protein \| chr1:1897567-1898986 FORWARD LENGTH=383	SoyBase	E_val: 2.00E-127	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005795	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
KOG1087	KOG	Cytosolic sorting protein GGA2/TOM1	JGI		ISS
PTHR13856	Panther	VHS DOMAIN CONTAINING PROTEIN FAMILY	JGI		ISS
PTHR13856:SF27	Panther	TARGET OF MYB1 RELATED (TOM1 - RELATED)	JGI		ISS
PF00790	PFAM	VHS domain	JGI		ISS
PF03127	PFAM	GAT domain	JGI		ISS
UniRef100_B9T1B0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein transporter, putative n=1 Tax=Ricinus communis RepID=B9T1B0_RICCO	SoyBase	E_val: 4.00E-143	ISS
UniRef100_I1JP41	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JP41_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g32040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g32040

Paralog	Evidence	Comments
Glyma19g34790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g32040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g163600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g32040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g32040

Limit To All Plant Sequences

>Glyma03g32040.1   sequence type=CDS   gene model=Glyma03g32040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATTGACACCACCACACACACCCCTCTTGTCTCTCGTCACTTGTTCACTTTATAATCTTCAAAGCTCAGCTTTTTACTTTCCTCACATTTCACCCGATCTAGTTAGGGTTCCTTACACGATGGAGCGGTTGAAGTGGGCGCAACTGGGTGAGAGGCTGAAGACCGGTGGGGCCCAGATGGGGCGAATGGTGAGCGGAAAAGTGAAGGAGATGCTTCAGGCGCCGACGCCGGAGTCCAAGATGGTGGACGAGGCCACGCTGGAGACCATGGAAGAACCCAATTGGGGCATGAATCTCAGAATCTGTGGCATGATCAACAGCGACCAGTTCAACGGCTCTGAGGTCGTTAAGGCCATCAAGAGAAAGATCAATCACAAGAGCCCCGTCGTTCAGACCCTCAGCCTTGACCTCCTCGAAGCCTGCGCCATGAATTGCGACAAGGTCTTCTCCGAAATCGCTTCCGAGAAGGTTCTCGATGAGATCATTCGCCTCATCGATAACCCGCAGGCCCATCACCAGACCCGCAGCCGGGCTTTTCAGTTGATTCGGGCCTGGGGCGAGTCCGAGGATCTCGCTTATCTTCCCGTCTTTCGTCAAACTTATATGAGTTTGAAAGGAAGGGATGAACCGGTTGACATGGCGGGAGGAAATTCACCACATGTTCCGTATGCCTCAGAGTCATATGTAGATGCCCCTGAAAGATACCCAATTCCTCAAGCTGAACTACATGATATTGATGATCCAGCAGCTTTCTCTTCTAATTACCAACACATATCAGTTGAAGAGAGGAAAGAGCATCTTGTGGTTGCTCGAAACAGTCTCGAATTGCTCTCTAGCATATTGAATTCTGATGCAGAGCCTAAAACTTTGAAGGAAGATTTAACCGTGAGCTTGTTGGATAAGTGCAAGCAATCTCTCTCTATCATCAAGGGGATAGTGGAAAGCACTACAAACGATGAAGCAACACTTTTTGAGGCTTTATATCTCAATGACGAGCTGCAGCAGATTGTTTCTAAATATGAGGAGTTAGATGCTGCTCAAAGTTCTGGGGCACAACAACCTCAAAATGCTGACACTGACAAGCATGATGCCAAAGCTGTTCAAAACCCCAATGAAGTACCCGAAAATGAAGAATCTGAAGCTGCTCAGAATCTGGATCGAAAGCTTCCCCAAAAGTCTAACACTCTTGAAGTCAATGCAACTGAGGGCGAGAGAGATGATCTTGCTGAAACTAAAATAGTGGATGGTCTTGCTGAAACTAAAATAGTAGATGATGGCACGAAGGAGAAGAATGCTGAATCTAGTTTCAAGCGAGATACCGAATGA

Predicted protein sequences of Glyma03g32040

Limit To All Plant Sequences

>Glyma03g32040.1   sequence type=predicted peptide   gene model=Glyma03g32040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ILTPPHTPLLSLVTCSLYNLQSSAFYFPHISPDLVRVPYTMERLKWAQLGERLKTGGAQMGRMVSGKVKEMLQAPTPESKMVDEATLETMEEPNWGMNLRICGMINSDQFNGSEVVKAIKRKINHKSPVVQTLSLDLLEACAMNCDKVFSEIASEKVLDEIIRLIDNPQAHHQTRSRAFQLIRAWGESEDLAYLPVFRQTYMSLKGRDEPVDMAGGNSPHVPYASESYVDAPERYPIPQAELHDIDDPAAFSSNYQHISVEERKEHLVVARNSLELLSSILNSDAEPKTLKEDLTVSLLDKCKQSLSIIKGIVESTTNDEATLFEALYLNDELQQIVSKYEELDAAQSSGAQQPQNADTDKHDAKAVQNPNEVPENEESEAAQNLDRKLPQKSNTLEVNATEGERDDLAETKIVDGLAETKIVDDGTKEKNAESSFKRDTE*

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