SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G31190 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF647 | chr2:13291458-13293681 REVERSE LENGTH=432 | SoyBase | E_val: 0 | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| KOG4249 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12770 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR12770:SF5 | Panther | gb def: putative protein [arabidopsis thaliana] | JGI | ISS | |
| PF04884 | PFAM | Protein of unknown function, DUF647 | JGI | ISS | |
| UniRef100_I1JP35 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1JP35_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q01J52 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0145M07.5 protein n=2 Tax=Oryza sativa RepID=Q01J52_ORYSA | SoyBase | E_val: 0 | ISS |
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Glyma03g31970 not represented in the dataset |
Glyma03g31970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g34730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g163000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g31970.2 sequence type=transcript gene model=Glyma03g31970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTAATTGAGAGTAGAAACAAAAAGAAAAAAAACATTGTAAGCGCTGTAACAGCAGGTTTCGGAGGCTTTTGGGGTAGCCGACGAGACACAGTGGATTCCTTAATTCTCCATGGATATGGTGCTCTCTTCTGTACCCATTATCTCTCTTTTCCTTTTTGGTTTATTAATGTGCCTTGGATTTGATTTTTGATAAGTACAGGAGATGAAAGAAGGTGAAGCCCCCGTGTTGTGGTTCGAAACCTCTGACTCTGTCTGTCGTCGACACCAGTTTGAACCCGATGGTCAACTCTCCGTAGTGATTGTCGATGATTCCAGGCCCTTATACCAAAGGGTGGCTGGATCTTTCATGAATAAATTTTTCCCCTCGGGATATCCGTACAGTGTGAATGAAGGCTATCTTAGATACACGCAGTTTCGAGCTGTGCAACACGTTACCAGTGCAGCATTATCAGTTCTATCAACTCAGTCCTTGCTATTTGCTGCAGGGTTGAGGCCCACTCCTGCGCAAGCAACTGCTGTTAGTTGGATTTTAAAGGATGGAATGCAACATGTAGGGAAGCTAATATGTAGCAATTGGGGAGCTAGAATGGATTCTGAACCTAAACGTTGGAGACTATTAGCTGATGCGCTCTATGATATAGGCACTGGCTTGGAAGTGCTTTCTCCATTATGCCCACATCTTTTTCTTGAAATGGCAGGCTTAGGAAATTTTGCAAAGGGGATGGCAGTTGTTGCAGCAAGAGCAACAAGGTTGCCTATATATTCTTCATTTGCCAAAGAAGGAAATCTCAGTGACCTATTTGCTAAAGGAGAGGCTTTTTCAACTCTCTTTAATGTTATTGGAATTGGAGTTGGAATTCAATTAGCATCTACCATCTGTGCATCAATGCAGGGAAAGTTAGTTGCGGGTCCTCTCCTTTCAATAATACATTTATACAGTGTGTCTGAAGAAATGAGAGCAACTCCTATCAATACGTTGAATCCACGAAGAACTGCAATGGTTGTGGCTGATTTTCTCAAGGCAGGAATTGTATCAAGCCCTGCTGATCTAAGATATAGAGAAAATCTGCTGTTCAATGTGCATGTCAAAGAAGATGCTGGAAATGTAAGAGTGGGGAAGGATGTGCACAAGGTCATTAAGCCTTCCAGGCTTCTTGAATTAAAACAAGTGTTCCCTGAGGAGAAGTTTCTCTTAAATTTTGGAAATAAATGCATTGACATGGTATTGGAACAAGATGCTAGTGGTGAAGATGCATTGAGGGGGTGGCTAGTTGCTGCATATGCTGCACAAACACATAGTTTCTCTCATGAGCTCAGTGCTACTAGTGTCCTGCATGAGGCTTATGAGAAAATGAATGGTGTCTTTCCTGTATTCTTAAGGGAATTGCAGAACAAAGGGTGGCACACTGATAGGTTTTTGGATGGAACTGGGAGCCGTTTTGCATTCTAGATAAATTTCATGTTGATTTAAGTAGGTTTTTATCCATTCTTTGAGAGAAATTTTGATGTGCTATGGGTGGAGTAAACTGTATATTTTATCTATTATTTTTTAAAAAGTAATGTTAGGACATACCTTTCTTCAAAAAACATGAAGATGGAGGAAGGTATGATAAGGACTTTGTGGCTTGTTTGAGGGATGCGGATTGAAGCTTCTTGATGGCCAAATCTGGTCTTATTTTCAGCACGAGGAGAGGTCAATACTATTTTGCAGACAATAATTTGGCTTTCACAGCACCACAGAGTTAATGTTGTTTTTGAATCAGATTGTTGATCATATATACAATAAAGGGGAAGATATTACAGATTGTGGGATATTTCTTAACCATAATTTAGAGAGATCCTGAGATTAAATCCTTCTTATTCAATTAAATTTGTTAGAAGACAGGGTATGACTGAAAGTATCTGATTCGTCTTTGTGAGAATATTTTCAATGTTATTCGTCTTTGTATCCAGCATATTATATCAATGAAAAATGTCTGATTCTGTCTGCCTTAAAAAAGACATGAAATCTTATAGAGAATGGACTAAATCCACATTTTTTTTAGCTCGAGGA
>Glyma03g31970.1 sequence type=CDS gene model=Glyma03g31970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATATGGAGATGAAAGAAGGTGAAGCCCCCGTGTTGTGGTTCGAAACCTCTGACTCTGTCTGTCGTCGACACCAGTTTGAACCCGATGGTCAACTCTCCGTAGTGATTGTCGATGATTCCAGGCCCTTATACCAAAGGGTGGCTGGATCTTTCATGAATAAATTTTTCCCCTCGGGATATCCGTACAGTGTGAATGAAGGCTATCTTAGATACACGCAGTTTCGAGCTGTGCAACACGTTACCAGTGCAGCATTATCAGTTCTATCAACTCAGTCCTTGCTATTTGCTGCAGGGTTGAGGCCCACTCCTGCGCAAGCAACTGCTGTTAGTTGGATTTTAAAGGATGGAATGCAACATGTAGGGAAGCTAATATGTAGCAATTGGGGAGCTAGAATGGATTCTGAACCTAAACGTTGGAGACTATTAGCTGATGCGCTCTATGATATAGGCACTGGCTTGGAAGTGCTTTCTCCATTATGCCCACATCTTTTTCTTGAAATGGCAGGCTTAGGAAATTTTGCAAAGGGGATGGCAGTTGTTGCAGCAAGAGCAACAAGGTTGCCTATATATTCTTCATTTGCCAAAGAAGGAAATCTCAGTGACCTATTTGCTAAAGGAGAGGCTTTTTCAACTCTCTTTAATGTTATTGGAATTGGAGTTGGAATTCAATTAGCATCTACCATCTGTGCATCAATGCAGGGAAAGTTAGTTGCGGGTCCTCTCCTTTCAATAATACATTTATACAGTGTGTCTGAAGAAATGAGAGCAACTCCTATCAATACGTTGAATCCACGAAGAACTGCAATGGTTGTGGCTGATTTTCTCAAGGCAGGAATTGTATCAAGCCCTGCTGATCTAAGATATAGAGAAAATCTGCTGTTCAATGTGCATGTCAAAGAAGATGCTGGAAATGTAAGAGTGGGGAAGGATGTGCACAAGGTCATTAAGCCTTCCAGGCTTCTTGAATTAAAACAAGTGTTCCCTGAGGAGAAGTTTCTCTTAAATTTTGGAAATAAATGCATTGACATGGTATTGGAACAAGATGCTAGTGGTGAAGATGCATTGAGGGGGTGGCTAGTTGCTGCATATGCTGCACAAACACATAGTTTCTCTCATGAGCTCAGTGCTACTAGTGTCCTGCATGAGGCTTATGAGAAAATGAATGGTGTCTTTCCTGTATTCTTAAGGGAATTGCAGAACAAAGGGTGGCACACTGATAGGTTTTTGGATGGAACTGGGAGCCGTTTTGCATTCTAG >Glyma03g31970.2 sequence type=CDS gene model=Glyma03g31970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGAAGGTGAAGCCCCCGTGTTGTGGTTCGAAACCTCTGACTCTGTCTGTCGTCGACACCAGTTTGAACCCGATGGTCAACTCTCCGTAGTGATTGTCGATGATTCCAGGCCCTTATACCAAAGGGTGGCTGGATCTTTCATGAATAAATTTTTCCCCTCGGGATATCCGTACAGTGTGAATGAAGGCTATCTTAGATACACGCAGTTTCGAGCTGTGCAACACGTTACCAGTGCAGCATTATCAGTTCTATCAACTCAGTCCTTGCTATTTGCTGCAGGGTTGAGGCCCACTCCTGCGCAAGCAACTGCTGTTAGTTGGATTTTAAAGGATGGAATGCAACATGTAGGGAAGCTAATATGTAGCAATTGGGGAGCTAGAATGGATTCTGAACCTAAACGTTGGAGACTATTAGCTGATGCGCTCTATGATATAGGCACTGGCTTGGAAGTGCTTTCTCCATTATGCCCACATCTTTTTCTTGAAATGGCAGGCTTAGGAAATTTTGCAAAGGGGATGGCAGTTGTTGCAGCAAGAGCAACAAGGTTGCCTATATATTCTTCATTTGCCAAAGAAGGAAATCTCAGTGACCTATTTGCTAAAGGAGAGGCTTTTTCAACTCTCTTTAATGTTATTGGAATTGGAGTTGGAATTCAATTAGCATCTACCATCTGTGCATCAATGCAGGGAAAGTTAGTTGCGGGTCCTCTCCTTTCAATAATACATTTATACAGTGTGTCTGAAGAAATGAGAGCAACTCCTATCAATACGTTGAATCCACGAAGAACTGCAATGGTTGTGGCTGATTTTCTCAAGGCAGGAATTGTATCAAGCCCTGCTGATCTAAGATATAGAGAAAATCTGCTGTTCAATGTGCATGTCAAAGAAGATGCTGGAAATGTAAGAGTGGGGAAGGATGTGCACAAGGTCATTAAGCCTTCCAGGCTTCTTGAATTAAAACAAGTGTTCCCTGAGGAGAAGTTTCTCTTAAATTTTGGAAATAAATGCATTGACATGGTATTGGAACAAGATGCTAGTGGTGAAGATGCATTGAGGGGGTGGCTAGTTGCTGCATATGCTGCACAAACACATAGTTTCTCTCATGAGCTCAGTGCTACTAGTGTCCTGCATGAGGCTTATGAGAAAATGAATGGTGTCTTTCCTGTATTCTTAAGGGAATTGCAGAACAAAGGGTGGCACACTGATAGGTTTTTGGATGGAACTGGGAGCCGTTTTGCATTCTAG
>Glyma03g31970.1 sequence type=predicted peptide gene model=Glyma03g31970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDMEMKEGEAPVLWFETSDSVCRRHQFEPDGQLSVVIVDDSRPLYQRVAGSFMNKFFPSGYPYSVNEGYLRYTQFRAVQHVTSAALSVLSTQSLLFAAGLRPTPAQATAVSWILKDGMQHVGKLICSNWGARMDSEPKRWRLLADALYDIGTGLEVLSPLCPHLFLEMAGLGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLFAKGEAFSTLFNVIGIGVGIQLASTICASMQGKLVAGPLLSIIHLYSVSEEMRATPINTLNPRRTAMVVADFLKAGIVSSPADLRYRENLLFNVHVKEDAGNVRVGKDVHKVIKPSRLLELKQVFPEEKFLLNFGNKCIDMVLEQDASGEDALRGWLVAAYAAQTHSFSHELSATSVLHEAYEKMNGVFPVFLRELQNKGWHTDRFLDGTGSRFAF* >Glyma03g31970.2 sequence type=predicted peptide gene model=Glyma03g31970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKEGEAPVLWFETSDSVCRRHQFEPDGQLSVVIVDDSRPLYQRVAGSFMNKFFPSGYPYSVNEGYLRYTQFRAVQHVTSAALSVLSTQSLLFAAGLRPTPAQATAVSWILKDGMQHVGKLICSNWGARMDSEPKRWRLLADALYDIGTGLEVLSPLCPHLFLEMAGLGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLFAKGEAFSTLFNVIGIGVGIQLASTICASMQGKLVAGPLLSIIHLYSVSEEMRATPINTLNPRRTAMVVADFLKAGIVSSPADLRYRENLLFNVHVKEDAGNVRVGKDVHKVIKPSRLLELKQVFPEEKFLLNFGNKCIDMVLEQDASGEDALRGWLVAAYAAQTHSFSHELSATSVLHEAYEKMNGVFPVFLRELQNKGWHTDRFLDGTGSRFAF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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