Glyma03g31960 - SoyBase

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Report for Sequence Feature Glyma03g31960

Feature Type:	gene_model
Chromosome:	Gm03
Start:	39794719
stop:	39797033
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g31960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31200	AT	Annotation by Michelle Graham. TAIR10: actin depolymerizing factor 6 \| chr2:13294171-13294948 FORWARD LENGTH=146	SoyBase	E_val: 1.00E-87	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: actin binding	SoyBase	N/A	ISS
KOG1735	KOG	Actin depolymerizing factor	JGI		ISS
PTHR11913	Panther	ACTIN DEPOLYMERIZING FACTOR	JGI		ISS
PF00241	PFAM	Cofilin/tropomyosin-type actin-binding protein	JGI		ISS
UniRef100_C6TC79	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TC79_SOYBN	SoyBase	E_val: 5.00E-105	ISS
UniRef100_H2EIF9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Actin depolymerizing factor n=1 Tax=Malus x domestica RepID=H2EIF9_MALDO	SoyBase	E_val: 1.00E-88	ISS

Expression Patterns of Glyma03g31960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g31960

Paralog	Evidence	Comments
Glyma19g34720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g31960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g162900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g31960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g31960

Limit To All Plant Sequences

>Glyma03g31960.2   sequence type=transcript   gene model=Glyma03g31960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATATATATATATATATATATATATATTCTCTTCTCTTCTAAGTTCTAACATTGCATTATTCACTTCAAAGTTCAATTCTTTCTCTGTCGTCGCTCTTTCTTCAACTTCAAGCTTAATTCCTCATGTCTTTCAGAGGCCTCAGCCGGCCAAATGCCACATCAGGCATGGGTGTTGCTGATCACAGCAAAAACACCTTCATGGAATTGAAGCAGAAGAAGGTTCATCGTTATGTGATCTTTAAGGTCGATGAGAAGAAAAGGGAGGTTGTGGTTGAGAAGACTGGTGGCCCGGCTGAGAGCTATGACGATTTTGCTGCATCTTTGCCGGAGAATGATTGCAGATATGCTGTCTTTGACTATGATTTCGTCACTTCTGAGAACTGTCAAAAGAGCAAAATCTTCTTCATTGCATGGTTAGTTAGTTTCTCTCTTTTTTATATGTAAAAGAAAAAGGATCTATATCTTGGTCTACATAATTAAAAGCATTGTTGCACCAACCAGCAAGATGTTTGTGAGGCATGATACATGATAGGCATTTTCTTGTGCAAAAAGCAAACCCTGTGGCATATATGATCATATCATATGTTTGGCAGTTTCAAAATAACCATGCCATGCAATTCTATTAAGCCCATGTCAATATTGCACTGCTTAAGTGTCACTCTTTGCTTGTTCTCTGATTATGGAGCTACATGTTCATTGTTTGTTGTCTTGGAT

Coding sequences of Glyma03g31960

Limit To All Plant Sequences

>Glyma03g31960.1   sequence type=CDS   gene model=Glyma03g31960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTCAGAGGCCTCAGCCGGCCAAATGCCACATCAGGCATGGGTGTTGCTGATCACAGCAAAAACACCTTCATGGAATTGAAGCAGAAGAAGGTTCATCGTTATGTGATCTTTAAGGTCGATGAGAAGAAAAGGGAGGTTGTGGTTGAGAAGACTGGTGGCCCGGCTGAGAGCTATGACGATTTTGCTGCATCTTTGCCGGAGAATGATTGCAGATATGCTGTCTTTGACTATGATTTCGTCACTTCTGAGAACTGTCAAAAGAGCAAAATCTTCTTCATTGCATGGTCCCCTTCAACATCTCGGATCCGTGCCAAGATGCTCTATGCCACTACTAAAGACAGGTTTAGACGTGAGCTAGATGGTGTCCATTATGAAATCCAGGCTACTGACCCCACAGAAATGGATCTTGAAGTGCTGAGAGACCGTGCACATTGA

>Glyma03g31960.2   sequence type=CDS   gene model=Glyma03g31960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTCAGAGGCCTCAGCCGGCCAAATGCCACATCAGGCATGGGTGTTGCTGATCACAGCAAAAACACCTTCATGGAATTGAAGCAGAAGAAGGTTCATCGTTATGTGATCTTTAAGGTCGATGAGAAGAAAAGGGAGGTTGTGGTTGAGAAGACTGGTGGCCCGGCTGAGAGCTATGACGATTTTGCTGCATCTTTGCCGGAGAATGATTGCAGATATGCTGTCTTTGACTATGATTTCGTCACTTCTGAGAACTGTCAAAAGAGCAAAATCTTCTTCATTGCATGGTTAGTTAGTTTCTCTCTTTTTTATATGTAA

Predicted protein sequences of Glyma03g31960

Limit To All Plant Sequences

>Glyma03g31960.1   sequence type=predicted peptide   gene model=Glyma03g31960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFRGLSRPNATSGMGVADHSKNTFMELKQKKVHRYVIFKVDEKKREVVVEKTGGPAESYDDFAASLPENDCRYAVFDYDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATTKDRFRRELDGVHYEIQATDPTEMDLEVLRDRAH*

>Glyma03g31960.2   sequence type=predicted peptide   gene model=Glyma03g31960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFRGLSRPNATSGMGVADHSKNTFMELKQKKVHRYVIFKVDEKKREVVVEKTGGPAESYDDFAASLPENDCRYAVFDYDFVTSENCQKSKIFFIAWLVSFSLFYM*

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