Glyma03g31790 - SoyBase

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Report for Sequence Feature Glyma03g31790

Feature Type:	gene_model
Chromosome:	Gm03
Start:	39629905
stop:	39633681
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g31790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58170	AT	Annotation by Michelle Graham. TAIR10: BET1P/SFT1P-like protein 14A \| chr3:21542632-21543775 REVERSE LENGTH=122	SoyBase	E_val: 2.00E-66	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005484	GO-mf	Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
KOG3385	KOG	V-SNARE	JGI		ISS
PTHR12791	Panther	GOLGI SNARE BET1-RELATED	JGI		ISS
PTHR12791:SF5	Panther	BET1-LIKE SNARE 1	JGI		ISS
PF05739	PFAM	SNARE domain	JGI		ISS
UniRef100_D5FGC6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bet1-like snare 1-1 n=1 Tax=Malus x domestica RepID=D5FGC6_MALDO	SoyBase	E_val: 6.00E-70	ISS
UniRef100_I1JP17	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1JP17_SOYBN	SoyBase	E_val: 7.00E-84	ISS

Expression Patterns of Glyma03g31790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g31790

Paralog	Evidence	Comments
Glyma19g34550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g31790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g161000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g31790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g31790

Limit To All Plant Sequences

>Glyma03g31790.2   sequence type=transcript   gene model=Glyma03g31790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTATGTTTGTTGGAGGCGTGATATTAAACACGCGTCAAGCAGTGTCGGACCCTATATAAACCCCACCGCCAATCTCTTCCTTCTTCGTCTGTTCTGCGTTCACCTTTGCTCAGTTTCGTAGTAAAATCAAAGTTCCGCTTCCCTCCGCAGAGACTGGACGATCTCGCGAGCCATGAATGCTAGACGAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCATCTGTTTACTCCTCTTCTCATGAAATTGATGAACATGATAATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGATTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATCGAATGGGGAATGATATGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTTGTTGTGCTCTTTCTTATAATATACTACCTCACTAGGTAATTTGATCTTTCATTCAACTGCCAGCTTTATGTTAGGTCCAAGAGGACGCTATTTCCTCTATTACTGTAATTAATGCTACTACCTCTGGCTCTGTAAGATAACTGTTCTGTATAAAGGTTTGATGTTTTAAACAGGTATTGAATCCAACGAGTAATGTCCATATCCGATTTGCGGTATATTTTCCCTTTCCTGTTGATTTAGGATACTCCTGTTTAACCATATGGAAAATGAAAAGGAAAGTGTATTTGACGTTTAACATTTTCATCTAGATTTTATCGTTGTCTAATTTATTTATTTATAACCAACTCAACTAAGTATAGCCTTTTATTTTTAAATTGTGCTTCGTCCCC

Coding sequences of Glyma03g31790

Limit To All Plant Sequences

>Glyma03g31790.1   sequence type=CDS   gene model=Glyma03g31790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCTAGACGAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCATCTGTTTACTCCTCTTCTCATGAAATTGATGAACATGATAATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGATTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATCGAATGGGGAATGATATGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTTGTTGTGCTCTTTCTTATAATATACTACCTCACTAGGTATTGA

>Glyma03g31790.2   sequence type=CDS   gene model=Glyma03g31790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCTAGACGAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCATCTGTTTACTCCTCTTCTCATGAAATTGATGAACATGATAATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGATTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATCGAATGGGGAATGATATGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTTGTTGTGCTCTTTCTTATAATATACTACCTCACTAGGTAA

Predicted protein sequences of Glyma03g31790

Limit To All Plant Sequences

>Glyma03g31790.1   sequence type=predicted peptide   gene model=Glyma03g31790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNARRDNRNNRVSLFDGIEEGGIRASSVYSSSHEIDEHDNEQALDGLQDRVNLLKRLSGDINEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSNQRMFTLVASFVVLFLIIYYLTRY*

>Glyma03g31790.2   sequence type=predicted peptide   gene model=Glyma03g31790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNARRDNRNNRVSLFDGIEEGGIRASSVYSSSHEIDEHDNEQALDGLQDRVNLLKRLSGDINEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSNQRMFTLVASFVVLFLIIYYLTR*

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