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Report for Sequence Feature Glyma03g31680

Feature Type:gene_model
Chromosome:Gm03
Start:39537095
stop:39538988
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g31680
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63450AT Annotation by Michelle Graham. TAIR10: cytochrome P450, family 94, subfamily B, polypeptide 1 | chr5:25408987-25410519 REVERSE LENGTH=510 SoyBaseE_val: 2.00E-155ISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009694GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016705GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen SoyBaseN/AISS
GO:0019825GO-mf Annotation by Michelle Graham. GO Molecular Function: oxygen binding SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG0157 KOG Cytochrome P450 CYP4/CYP19/CYP26 subfamilies JGI ISS
PTHR24296Panther FAMILY NOT NAMED JGI ISS
PF00067PFAM Cytochrome P450 JGI ISS
UniRef100_I1JP09UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JP09_SOYBN SoyBaseE_val: 0ISS
UniRef100_O81117UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 94A1 n=1 Tax=Vicia sativa RepID=C94A1_VICSA SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g31680
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g31680
ParalogEvidenceComments
Glyma19g34480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g31680 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g160100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g31680
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g31680
>Glyma03g31680.1   sequence type=CDS   gene model=Glyma03g31680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGACATACTTCTGAATCTCCAGCTGTTAGCTCCTTTCTTCCTCTTCTTAATACTTCCAGTGTTTTTCTTCTTCTGTTTCACCTCCTCAGGTCCTACAAAAGGAACCATCCCTATTCCAAAACCATACCCTATTATTGGTCACTACTTCGCCCTCAAAAGCGTCGGCAACCGCCGTATCCAGTGGCTATCCGATATTGTCAAAATCTCACCGGCCGGCACGTTCACCCTCCACCGCCCCTTGGGCCGCCGTGGAGTCATCACCGGCAACCCCGCCACCGTAGAGTACATTCTCAAGACACGTTTCTCCAATTACCAAAAGGGCAGAACCACTACTAGCATTCTCTCCGATTTCCTCGGCACAGGAATCTTCAACGCAGACGGCAACACGTGGAAGTTTCAGAGGCAAGTAGCCAGCCACGAATTCAACACCAAGTCTCTACGCAAATTCGTTGAGCACGTTGTCGATGCAGAGCTCTCCAACCGTCTCGTTCCTATCCTCACTTCAGCAGCAGCAGCACAAGACAAAACACTTGATTTCCAAGACATTCTTCAACGTTTCGCGTTTGACAACATCTGCAAAATCGCGTTTGGCTTCGACCCCGAATACCTGACGCTGTCAGCTGAACGGAGCAAGTTCGCACAAGCCTTCGAAGAAGCAACGGAGATCAGCAGCAAACGGTTCCGCGAGCCGTTGCCGTTAGTCTGGAAAATAAAGAGATTACTTAACATAGGTTCCGAAAGGCGTCTAAGAAGAGCGGTGAAGGAAGTGCACGAGTTCGCCAGGAACATAGTGAGAGAGAAGAAAAAGGAGCTGAAGGAGAAACAATCGCTTGAATCTGTTGATATGCTTTCGCGGTTCTTGAGTTCGGGGCACTCCGATGAAGACTTCGTAACGGACATAGTAATAAGCTTCATACTGGCCGGGAAGGATACCACTTCAGCGGCGCTGACGTGGTTTTTCTGGCTACTATCGAAAAATCCGCGCATAGAAAAGGAGGTTTTGAAGGAGATAATGGAGAAATCAGAGGCTCCGGTGTATGATGAAGTGAAGGATATGGTTTACACGCATGCCGCGTTGTGCGAGAGCATGAGGTTGTACCCGCCGGTGCCGTTAGACACGAAGGAAACCGTGGACGACGATGTTTTGCCGGATGGGACGGTGGTGAAGAAGGGGATGATGGTGACGTATCACGTGTACGCGATGGGGAGGATGGAAAGTATTTGGGGTGAGGATTGGAGTGAGTTTAAGCCAGAGAGGTGGTTAGAGAAGGTTGAATCGGGAAAGTGGAAGTTTGTCGGAAGAAATTCATTCACTTATCCAGTGTTTCAGGCCGGTCCCAGAATTTGTTTGGGAAAGGAAATGGCCTTTATGCAGATGCAAAGGTTGGTGGCTGGTATTCTCAGGCGCTTCACGGTGGTTCCCGCGGTGGCAGAAGGGGTGGAGCCTCACTACTTTGCCTTCTTGACCTCCCAGATGGAAGGTGGTTTCCCAGTCAAGATCATCAAGAGGGAAACTTCAACTTGA
Predicted protein sequences of Glyma03g31680
>Glyma03g31680.1   sequence type=predicted peptide   gene model=Glyma03g31680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIDILLNLQLLAPFFLFLILPVFFFFCFTSSGPTKGTIPIPKPYPIIGHYFALKSVGNRRIQWLSDIVKISPAGTFTLHRPLGRRGVITGNPATVEYILKTRFSNYQKGRTTTSILSDFLGTGIFNADGNTWKFQRQVASHEFNTKSLRKFVEHVVDAELSNRLVPILTSAAAAQDKTLDFQDILQRFAFDNICKIAFGFDPEYLTLSAERSKFAQAFEEATEISSKRFREPLPLVWKIKRLLNIGSERRLRRAVKEVHEFARNIVREKKKELKEKQSLESVDMLSRFLSSGHSDEDFVTDIVISFILAGKDTTSAALTWFFWLLSKNPRIEKEVLKEIMEKSEAPVYDEVKDMVYTHAALCESMRLYPPVPLDTKETVDDDVLPDGTVVKKGMMVTYHVYAMGRMESIWGEDWSEFKPERWLEKVESGKWKFVGRNSFTYPVFQAGPRICLGKEMAFMQMQRLVAGILRRFTVVPAVAEGVEPHYFAFLTSQMEGGFPVKIIKRETST*






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