Glyma03g31630 - SoyBase

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Report for Sequence Feature Glyma03g31630

Feature Type:	gene_model
Chromosome:	Gm03
Start:	39496892
stop:	39499620
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g31630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30590	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 21 \| chr2:13033891-13035303 FORWARD LENGTH=380	SoyBase	E_val: 3.00E-112	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
PF10533	PFAM	Plant zinc cluster domain	JGI		ISS
UniRef100_B0LUS1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Glycine max RepID=B0LUS1_SOYBN	SoyBase	E_val: 5.00E-161	ISS
UniRef100_I1JP03	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JP03_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g31630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g31630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g159700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g31630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g31630

Limit To All Plant Sequences

>Glyma03g31630.2   sequence type=transcript   gene model=Glyma03g31630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGGAATTTAATATTTAATATACAATTTAATTAAAGTTGGAAGCTCTGTATTCTTGTGGCTATGTGAATTGTCAAGCTAAGCTTAAGTCCACTCAATCTCGAATCCATGGAATGAGAATCTAGGGTTTGACAGCACCAAGTCCATCAAGATAGAGGGTAATATGGAGGATGTTGAAGAAGCTAATAGAGCAGCTGTTGAGAGCTGTCATAGAGTTCTGAGTATGATGTCTCAGCCAGGGAATGAAGTTCATTGTAGGAATTTGATGGTGGAAACTGGAGGGGCTATAGTGAGGTTCAAGAAAGTTGTTTCACTCCTAAGTAGTGGTTTGGGTCATGCAAGAGTAAGGAAGCACAAAAAACTTCAAATCCCTTTTTCTGAAAATATTCTCTTGGACAACCAAATTTGCAAAACCGATCATCATTCAAAATGTCTGCAGTTTCCTCATACAATTTTTACTGAGAATTCAGTTCAGGGATTGGGTCAAACAGTTAGAAATTCAATCTATATGATGGGAAACCCTAGTTTGGAGTTGAGCTCCAATGAGAGAAGCCCTCTAAACCTTACCCGACAAACTTCAGCAACACATTACCACTTCCTTCAGCAGCAACAAATGAAACATCAAGCAGAAATGATGTTTCGAAGGAACAACAGTGTCGTAAATTTGAATTTTGACAGCTCTAGCTGCACACCATCGATGTCGTCGTCTACTAGGTCTTTCATTTCTTCCTTGAGCATAGATGGAAGCGTGGCTAACATGGATGGAAATGGAAGTGCATTCCATTTATTAGGAGCTGCACACTCTTCTTATCAGAATTCACAACAGCAAAAGAGAAAGTGTTCTGCCAGAGGTGATGAGGGTAGTGTGAAGTGTGGGAGCAGTGCAAGATGTCATTGCTCAAAGAAGAGGAAACATAGAGTGAAAAGATCAGTTAAGGTGCCTGCTACCAGCAACAAACTTGCGGATATCCCTCCCGATGATTATTCATGGAGGAAGTATGGGCAGAAACCAATCAAGGGATCACCTCACCCTAGGGGATACTATAAGTGCAGCAGCACCAGAGGGTGTCCTGCTAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTTCCATGCTAATTGTTACCTATGAAGGCGATCACAACCATCCCAAGTTACAACACAATCCACAAATACGTGAACTACATTGAGAGAGCTGAACCAAGATCAAGCCCCATTTGTACAACTTATTGTCAGTTTGGTAATGAGTTGTTTAGTTAGGGAGGTGGGGATGAGGATCGGTGATAAAATGAACTAGTATGTATAATCGGTAGTTTCATTCACATGAACTCATTAATTCACCTATTTTTTTATGTTTTTCATCATCTGGTAAGCTTCATGTTGATTTTATTGTAAAAATTTAGTCATTTTTTTAAAGTAGAATTAACATGAAATTCGTTG

Coding sequences of Glyma03g31630

Limit To All Plant Sequences

>Glyma03g31630.1   sequence type=CDS   gene model=Glyma03g31630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGATGTTGAAGAAGCTAATAGAGCAGCTGTTGAGAGCTGTCATAGAGTTCTGAGTATGATGTCTCAGCCAGGGAATGAAGTTCATTGTAGGAATTTGATGGTGGAAACTGGAGGGGCTATAGTGAGGTTCAAGAAAGTTGTTTCACTCCTAAGTAGTGGTTTGGGTCATGCAAGAGTAAGGAAGCACAAAAAACTTCAAATCCCTTTTTCTGAAAATATTCTCTTGGACAACCAAATTTGCAAAACCGATCATCATTCAAAATGTCTGCAGTTTCCTCATACAATTTTTACTGAGAATTCAGTTCAGGGATTGGGTCAAACAGTTAGAAATTCAATCTATATGATGGGAAACCCTAGTTTGGAGTTGAGCTCCAATGAGAGAAGCCCTCTAAACCTTACCCGACAAACTTCAGCAACACATTACCACTTCCTTCAGCAGCAACAAATGAAACATCAAGCAGAAATGATGTTTCGAAGGAACAACAGTGTCGTAAATTTGAATTTTGACAGCTCTAGCTGCACACCATCGATGTCGTCGTCTACTAGGTCTTTCATTTCTTCCTTGAGCATAGATGGAAGCGTGGCTAACATGGATGGAAATGGAAGTGCATTCCATTTATTAGGAGCTGCACACTCTTCTTATCAGAATTCACAACAGCAAAAGAGAAAGTGTTCTGCCAGAGGTGATGAGGGTAGTGTGAAGTGTGGGAGCAGTGCAAGATGTCATTGCTCAAAGAAGAGGAAACATAGAGTGAAAAGATCAGTTAAGGTGCCTGCTACCAGCAACAAACTTGCGGATATCCCTCCCGATGATTATTCATGGAGGAAGTATGGGCAGAAACCAATCAAGGGATCACCTCACCCTAGGGGATACTATAAGTGCAGCAGCACCAGAGGGTGTCCTGCTAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTTCCATGCTAATTGTTACCTATGAAGGCGATCACAACCATCCCAAGTTACAACACAATCCACAAATACGTGAACTACATTGA

>Glyma03g31630.2   sequence type=CDS   gene model=Glyma03g31630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGATGTTGAAGAAGCTAATAGAGCAGCTGTTGAGAGCTGTCATAGAGTTCTGAGTATGATGTCTCAGCCAGGGAATGAAGTTCATTGTAGGAATTTGATGGTGGAAACTGGAGGGGCTATAGTGAGGTTCAAGAAAGTTGTTTCACTCCTAAGTAGTGGTTTGGGTCATGCAAGAGTAAGGAAGCACAAAAAACTTCAAATCCCTTTTTCTGAAAATATTCTCTTGGACAACCAAATTTGCAAAACCGATCATCATTCAAAATGTCTGCAGTTTCCTCATACAATTTTTACTGAGAATTCAGTTCAGGGATTGGGTCAAACAGTTAGAAATTCAATCTATATGATGGGAAACCCTAGTTTGGAGTTGAGCTCCAATGAGAGAAGCCCTCTAAACCTTACCCGACAAACTTCAGCAACACATTACCACTTCCTTCAGCAGCAACAAATGAAACATCAAGCAGAAATGATGTTTCGAAGGAACAACAGTGTCGTAAATTTGAATTTTGACAGCTCTAGCTGCACACCATCGATGTCGTCGTCTACTAGGTCTTTCATTTCTTCCTTGAGCATAGATGGAAGCGTGGCTAACATGGATGGAAATGGAAGTGCATTCCATTTATTAGGAGCTGCACACTCTTCTTATCAGAATTCACAACAGCAAAAGAGAAAGTGTTCTGCCAGAGGTGATGAGGGTAGTGTGAAGTGTGGGAGCAGTGCAAGATGTCATTGCTCAAAGAAGAGGAAACATAGAGTGAAAAGATCAGTTAAGGTGCCTGCTACCAGCAACAAACTTGCGGATATCCCTCCCGATGATTATTCATGGAGGAAGTATGGGCAGAAACCAATCAAGGGATCACCTCACCCTAGGGGATACTATAAGTGCAGCAGCACCAGAGGGTGTCCTGCTAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTTCCATGCTAATTGTTACCTATGAAGGCGATCACAACCATCCCAAGTTACAACACAATCCACAAATACGTGAACTACATTGA

Predicted protein sequences of Glyma03g31630

Limit To All Plant Sequences

>Glyma03g31630.1   sequence type=predicted peptide   gene model=Glyma03g31630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDVEEANRAAVESCHRVLSMMSQPGNEVHCRNLMVETGGAIVRFKKVVSLLSSGLGHARVRKHKKLQIPFSENILLDNQICKTDHHSKCLQFPHTIFTENSVQGLGQTVRNSIYMMGNPSLELSSNERSPLNLTRQTSATHYHFLQQQQMKHQAEMMFRRNNSVVNLNFDSSSCTPSMSSSTRSFISSLSIDGSVANMDGNGSAFHLLGAAHSSYQNSQQQKRKCSARGDEGSVKCGSSARCHCSKKRKHRVKRSVKVPATSNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSTRGCPARKHVERCLEEPSMLIVTYEGDHNHPKLQHNPQIRELH*

>Glyma03g31630.2   sequence type=predicted peptide   gene model=Glyma03g31630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDVEEANRAAVESCHRVLSMMSQPGNEVHCRNLMVETGGAIVRFKKVVSLLSSGLGHARVRKHKKLQIPFSENILLDNQICKTDHHSKCLQFPHTIFTENSVQGLGQTVRNSIYMMGNPSLELSSNERSPLNLTRQTSATHYHFLQQQQMKHQAEMMFRRNNSVVNLNFDSSSCTPSMSSSTRSFISSLSIDGSVANMDGNGSAFHLLGAAHSSYQNSQQQKRKCSARGDEGSVKCGSSARCHCSKKRKHRVKRSVKVPATSNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSTRGCPARKHVERCLEEPSMLIVTYEGDHNHPKLQHNPQIRELH*

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