Glyma03g31590 - SoyBase

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Report for Sequence Feature Glyma03g31590

Feature Type:	gene_model
Chromosome:	Gm03
Start:	39458328
stop:	39464418
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g31590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06780	AT	Annotation by Michelle Graham. TAIR10: galacturonosyltransferase 6 \| chr1:2083689-2086853 FORWARD LENGTH=589	SoyBase	E_val: 0	ISS
GO:0016051	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0047262	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity	SoyBase	N/A	ISS
PTHR13778	Panther	GLYCOSYL TRANSFERASE-RELATED	JGI		ISS
PTHR13778:SF6	Panther		JGI		ISS
PF01501	PFAM	Glycosyl transferase family 8	JGI		ISS
UniRef100_B9S4T2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase QUASIMODO1, putative n=1 Tax=Ricinus communis RepID=B9S4T2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JNZ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNZ9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g31590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g31590

Paralog	Evidence	Comments
Glyma19g34420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g31590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g159200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g31590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g31590

Limit To All Plant Sequences

>Glyma03g31590.2   sequence type=transcript   gene model=Glyma03g31590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATGCATGTTAGTGTGTTAAGTACCGTTTTCCTGATTCCCACCCTTGTCAACCTGGCGGCACAAATCCCAAGACCCCCCAAGGTATATAAATTTAACGCCAAGACAAGAAGAACTATTTTTTAAATAATAAAAAAAAAATAGAGAGAGAAATTAAACAAGGCAAATCACGGAAGGGGCGAACAAGGATCATGGAGCTGCTTCCAGTTTCTCTCTCTAAAACGCGTAAAAGCGAATAACTGAAACCCTAGCCTCTGTGTCTGTTATTATTAGTATTTACTTCGATTCCACGCAGCGAATTCAATTCTCTGCGATCTGTATCCGTGAAATCAATGTGCCTCTCTTGGAATCGTACTGCTACTCGCAACGGTGACCGCCATCAACGATGAAGCAGTCACGTCGCCGGCAGAGGACTCTGCTCCTCGCTCTGCTCTTTCTCTCCGTCGTTTCTCCGCTCGTTTTCGTCTCTCACCACCTCAACACCATCACTCCCGACGGACGACGAGATTTTCTTGATGAGTTATCGAGTTTTACGCATAGGACAGACCCTTTAAATGCAATTGAACAGGAAGGTGCTGAAGAATTAGAAGAGCCAAAAGAAATTGTTTATAAAGAAGAGGATTTTGTTTCAACAAATAGTTACATTTTGCAAAAGACTAATGATACTGAGGGATCTAAAAGTGAGGGGTACAGAAATAACACTTTGGAAAGAAATGAATTCGACCAGCACAAAAGACAAAACCAGGAAGCTCAACAAAAAGGATTACTCTCCACGGATGGGGATGTGAATATATTCAATACAACAGTCACACATAATCAGAATATACACACTCATTTTCAAAGAGTGACAGATGAGAATGTTGAAGTGACAGGAAACCAATCTGTTCCAAAAGCAACCCAACATCGTCAGAGTTCATGCCCTCAGTCTCAGAGAGTGACAAATCAGAAGGTTTTGGAGATTAAGGATCAAATTATTAGAGCCAGAGCATACTTGGGGTTTGCTACACCAAGCAGCAACTCACACTTGGTGAAGGAGTTGAAGCTGAGAATTAAAGAGATGGAACGTGCTGTTGGAGAAGCTACTAAGGATTCAGAGCTGTCAAGGAGTGCTTTGCAGAAAACAAGACACATGGAAGCTTCACTGTCTAAAGCCAACTGTGTTTTCCCAGACTGCACTGCTATGGCAGCTAAGCTCCGTGCAATGAATCATAATGCTGAAGAGCAAGTTCATTCTCATCAACGTGAAGCAACACATCTTGTTCATCTTGCTGCAAGGACCACCCCAAAAGGTCTTCACTGTCTTTCTATGCAGCTAACTGCTGATTACTTTGCCCTGAAACCTGAGGACCGGAAGCTTCCAAATGAAAATAAGATTCATGATCCAAAACTTTATCATTATGCTGTCTTCTCTGACAATCTTCTAGCATGTGCTGTGGTTGTTAACTCCACTGTCTCTAATGCCAAGAAACAGGAGAAACTTGTTTTCCATGTAGTAACCAATTCACTCAACTTTCCTGCAATCTGGATGTGGTTCTTATTAAACCCTCCTGGCAAAGCCACAGTCCACATACAAAGCATTGAGAACTTTGAATGGTTGCCCAAGTACAATACATTCAACAAACATAATTCCAGTGATCCAAGATATACTTCTGAGTTGAACTACCTGCGTTTCTACTTGCCAGATATCTTCCCTACTCTAAATAAGATTCTGTTCTTTGATCATGATGTGGTGGTGCAACAAGATCTCAGTGGACTATGGAATGCCAATATGAAAGGAAAAGTAATTGCAGCAGTGGGCACTTGTCAGGAAGGTGGAACCTCATTTCATAGGATGGATATGTTCATAAACTTCTCAGATCCATTCATTGCAAAGAGGTTTGATGTCAATGCTTGTACATGGGCATTTGGGATGAACTTGTTTGATTTACAACAGTGGAGGAGACATAATTTAACTGCTCTCTACCACAGATATTTGCAAATGGGTTCCAAGAGACCATTGTGGAACATTGGAAGTCTGCCTTTAGGCTGGCTCACTTTCTATAACAAGACTAAGGTTTTGGACAGACGGTGGCACATTCTTGGCCTTGGTTATGACTCAGTTGTCGATAAAAACGAGATTGAGCGAGCTGCCATTATACACTACGATGGAATTAGGAAACCGTGGTTGGACATTGCAATGGGAAGATACCGAAGTTACTGGACCAAATATTTGAACTTTGACCTCCCTATTTTGCAACGTTGCAATCTCCAGGCGTAGCCCAAAATTTAAATATTATTACTCTACCTGGCAGGTTTTATTTGATCAATTTGCCTGCTTCAGTCGATTCTTTATTGTTCTTTGGCGATTCATCCTGTAAAGCCCTTCATAGATGCATAGAATTTCCGACATATATCTTTTTAGAAGCTTAGCTAAATTGTAGTGACATTGAGATGAAATAAGACTCGCATAGGTATTTTAGCTGCTTGGAGATGCTATTGGTTGTTGTGTACATAATATTCATTCCCGTGCTCTATTTGGTCGTGCTACCGCTGATAACAATCAATTACTTTAAGGAACTAATTTATACACAAATTGTGGAAATGACGGTTGCAATTTGATTTGTAACGTTAATTATGCCGTGTGATCATTGTCCCTGTTATATGAATCTAGAACCCAGTGGGATTCATGTATTTTTAGTGTAATGTTTGCTTCTTCCGACTTATATGTCTTGAATGTGATATGGTTTATTAGACACTCGT

Coding sequences of Glyma03g31590

Limit To All Plant Sequences

>Glyma03g31590.1   sequence type=CDS   gene model=Glyma03g31590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCAGTCACGTCGCCGGCAGAGGACTCTGCTCCTCGCTCTGCTCTTTCTCTCCGTCGTTTCTCCGCTCGTTTTCGTCTCTCACCACCTCAACACCATCACTCCCGACGGACGACGAGATTTTCTTGATGAGTTATCGAGTTTTACGCATAGGACAGACCCTTTAAATGCAATTGAACAGGAAGGTGCTGAAGAATTAGAAGAGCCAAAAGAAATTGTTTATAAAGAAGAGGATTTTGTTTCAACAAATAGTTACATTTTGCAAAAGACTAATGATACTGAGGGATCTAAAAGTGAGGGGTACAGAAATAACACTTTGGAAAGAAATGTTTCAGAATTCGACCAGCACAAAAGACAAAACCAGGAAGCTCAACAAAAAGGATTACTCTCCACGGATGGGGATGTGAATATATTCAATACAACAGTCACACATAATCAGAATATACACACTCATTTTCAAAGAGTGACAGATGAGAATGTTGAAGTGACAGGAAACCAATCTGTTCCAAAAGCAACCCAACATCGTCAGAGTTCATGCCCTCAGTCTCAGAGAGTGACAAATCAGAAGGTTTTGGAGATTAAGGATCAAATTATTAGAGCCAGAGCATACTTGGGGTTTGCTACACCAAGCAGCAACTCACACTTGGTGAAGGAGTTGAAGCTGAGAATTAAAGAGATGGAACGTGCTGTTGGAGAAGCTACTAAGGATTCAGAGCTGTCAAGGAGTGCTTTGCAGAAAACAAGACACATGGAAGCTTCACTGTCTAAAGCCAACTGTGTTTTCCCAGACTGCACTGCTATGGCAGCTAAGCTCCGTGCAATGAATCATAATGCTGAAGAGCAAGTTCATTCTCATCAACGTGAAGCAACACATCTTGTTCATCTTGCTGCAAGGACCACCCCAAAAGGTCTTCACTGTCTTTCTATGCAGCTAACTGCTGATTACTTTGCCCTGAAACCTGAGGACCGGAAGCTTCCAAATGAAAATAAGATTCATGATCCAAAACTTTATCATTATGCTGTCTTCTCTGACAATCTTCTAGCATGTGCTGTGGTTGTTAACTCCACTGTCTCTAATGCCAAGAAACAGGAGAAACTTGTTTTCCATGTAGTAACCAATTCACTCAACTTTCCTGCAATCTGGATGTGGTTCTTATTAAACCCTCCTGGCAAAGCCACAGTCCACATACAAAGCATTGAGAACTTTGAATGGTTGCCCAAGTACAATACATTCAACAAACATAATTCCAGTGATCCAAGATATACTTCTGAGTTGAACTACCTGCGTTTCTACTTGCCAGATATCTTCCCTACTCTAAATAAGATTCTGTTCTTTGATCATGATGTGGTGGTGCAACAAGATCTCAGTGGACTATGGAATGCCAATATGAAAGGAAAAGTAATTGCAGCAGTGGGCACTTGTCAGGAAGGTGGAACCTCATTTCATAGGATGGATATGTTCATAAACTTCTCAGATCCATTCATTGCAAAGAGGTTTGATGTCAATGCTTGTACATGGGCATTTGGGATGAACTTGTTTGATTTACAACAGTGGAGGAGACATAATTTAACTGCTCTCTACCACAGATATTTGCAAATGGGTTCCAAGAGACCATTGTGGAACATTGGAAGTCTGCCTTTAGGCTGGCTCACTTTCTATAACAAGACTAAGGTTTTGGACAGACGGTGGCACATTCTTGGCCTTGGTTATGACTCAGTTGTCGATAAAAACGAGATTGAGCGAGCTGCCATTATACACTACGATGGAATTAGGAAACCGTGGTTGGACATTGCAATGGGAAGATACCGAAGTTACTGGACCAAATATTTGAACTTTGACCTCCCTATTTTGCAACGTTGCAATCTCCAGGCGTAG

>Glyma03g31590.2   sequence type=CDS   gene model=Glyma03g31590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCAGTCACGTCGCCGGCAGAGGACTCTGCTCCTCGCTCTGCTCTTTCTCTCCGTCGTTTCTCCGCTCGTTTTCGTCTCTCACCACCTCAACACCATCACTCCCGACGGACGACGAGATTTTCTTGATGAGTTATCGAGTTTTACGCATAGGACAGACCCTTTAAATGCAATTGAACAGGAAGGTGCTGAAGAATTAGAAGAGCCAAAAGAAATTGTTTATAAAGAAGAGGATTTTGTTTCAACAAATAGTTACATTTTGCAAAAGACTAATGATACTGAGGGATCTAAAAGTGAGGGGTACAGAAATAACACTTTGGAAAGAAATGAATTCGACCAGCACAAAAGACAAAACCAGGAAGCTCAACAAAAAGGATTACTCTCCACGGATGGGGATGTGAATATATTCAATACAACAGTCACACATAATCAGAATATACACACTCATTTTCAAAGAGTGACAGATGAGAATGTTGAAGTGACAGGAAACCAATCTGTTCCAAAAGCAACCCAACATCGTCAGAGTTCATGCCCTCAGTCTCAGAGAGTGACAAATCAGAAGGTTTTGGAGATTAAGGATCAAATTATTAGAGCCAGAGCATACTTGGGGTTTGCTACACCAAGCAGCAACTCACACTTGGTGAAGGAGTTGAAGCTGAGAATTAAAGAGATGGAACGTGCTGTTGGAGAAGCTACTAAGGATTCAGAGCTGTCAAGGAGTGCTTTGCAGAAAACAAGACACATGGAAGCTTCACTGTCTAAAGCCAACTGTGTTTTCCCAGACTGCACTGCTATGGCAGCTAAGCTCCGTGCAATGAATCATAATGCTGAAGAGCAAGTTCATTCTCATCAACGTGAAGCAACACATCTTGTTCATCTTGCTGCAAGGACCACCCCAAAAGGTCTTCACTGTCTTTCTATGCAGCTAACTGCTGATTACTTTGCCCTGAAACCTGAGGACCGGAAGCTTCCAAATGAAAATAAGATTCATGATCCAAAACTTTATCATTATGCTGTCTTCTCTGACAATCTTCTAGCATGTGCTGTGGTTGTTAACTCCACTGTCTCTAATGCCAAGAAACAGGAGAAACTTGTTTTCCATGTAGTAACCAATTCACTCAACTTTCCTGCAATCTGGATGTGGTTCTTATTAAACCCTCCTGGCAAAGCCACAGTCCACATACAAAGCATTGAGAACTTTGAATGGTTGCCCAAGTACAATACATTCAACAAACATAATTCCAGTGATCCAAGATATACTTCTGAGTTGAACTACCTGCGTTTCTACTTGCCAGATATCTTCCCTACTCTAAATAAGATTCTGTTCTTTGATCATGATGTGGTGGTGCAACAAGATCTCAGTGGACTATGGAATGCCAATATGAAAGGAAAAGTAATTGCAGCAGTGGGCACTTGTCAGGAAGGTGGAACCTCATTTCATAGGATGGATATGTTCATAAACTTCTCAGATCCATTCATTGCAAAGAGGTTTGATGTCAATGCTTGTACATGGGCATTTGGGATGAACTTGTTTGATTTACAACAGTGGAGGAGACATAATTTAACTGCTCTCTACCACAGATATTTGCAAATGGGTTCCAAGAGACCATTGTGGAACATTGGAAGTCTGCCTTTAGGCTGGCTCACTTTCTATAACAAGACTAAGGTTTTGGACAGACGGTGGCACATTCTTGGCCTTGGTTATGACTCAGTTGTCGATAAAAACGAGATTGAGCGAGCTGCCATTATACACTACGATGGAATTAGGAAACCGTGGTTGGACATTGCAATGGGAAGATACCGAAGTTACTGGACCAAATATTTGAACTTTGACCTCCCTATTTTGCAACGTTGCAATCTCCAGGCGTAG

Predicted protein sequences of Glyma03g31590

Limit To All Plant Sequences

>Glyma03g31590.1   sequence type=predicted peptide   gene model=Glyma03g31590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQSRRRQRTLLLALLFLSVVSPLVFVSHHLNTITPDGRRDFLDELSSFTHRTDPLNAIEQEGAEELEEPKEIVYKEEDFVSTNSYILQKTNDTEGSKSEGYRNNTLERNVSEFDQHKRQNQEAQQKGLLSTDGDVNIFNTTVTHNQNIHTHFQRVTDENVEVTGNQSVPKATQHRQSSCPQSQRVTNQKVLEIKDQIIRARAYLGFATPSSNSHLVKELKLRIKEMERAVGEATKDSELSRSALQKTRHMEASLSKANCVFPDCTAMAAKLRAMNHNAEEQVHSHQREATHLVHLAARTTPKGLHCLSMQLTADYFALKPEDRKLPNENKIHDPKLYHYAVFSDNLLACAVVVNSTVSNAKKQEKLVFHVVTNSLNFPAIWMWFLLNPPGKATVHIQSIENFEWLPKYNTFNKHNSSDPRYTSELNYLRFYLPDIFPTLNKILFFDHDVVVQQDLSGLWNANMKGKVIAAVGTCQEGGTSFHRMDMFINFSDPFIAKRFDVNACTWAFGMNLFDLQQWRRHNLTALYHRYLQMGSKRPLWNIGSLPLGWLTFYNKTKVLDRRWHILGLGYDSVVDKNEIERAAIIHYDGIRKPWLDIAMGRYRSYWTKYLNFDLPILQRCNLQA*

>Glyma03g31590.2   sequence type=predicted peptide   gene model=Glyma03g31590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQSRRRQRTLLLALLFLSVVSPLVFVSHHLNTITPDGRRDFLDELSSFTHRTDPLNAIEQEGAEELEEPKEIVYKEEDFVSTNSYILQKTNDTEGSKSEGYRNNTLERNEFDQHKRQNQEAQQKGLLSTDGDVNIFNTTVTHNQNIHTHFQRVTDENVEVTGNQSVPKATQHRQSSCPQSQRVTNQKVLEIKDQIIRARAYLGFATPSSNSHLVKELKLRIKEMERAVGEATKDSELSRSALQKTRHMEASLSKANCVFPDCTAMAAKLRAMNHNAEEQVHSHQREATHLVHLAARTTPKGLHCLSMQLTADYFALKPEDRKLPNENKIHDPKLYHYAVFSDNLLACAVVVNSTVSNAKKQEKLVFHVVTNSLNFPAIWMWFLLNPPGKATVHIQSIENFEWLPKYNTFNKHNSSDPRYTSELNYLRFYLPDIFPTLNKILFFDHDVVVQQDLSGLWNANMKGKVIAAVGTCQEGGTSFHRMDMFINFSDPFIAKRFDVNACTWAFGMNLFDLQQWRRHNLTALYHRYLQMGSKRPLWNIGSLPLGWLTFYNKTKVLDRRWHILGLGYDSVVDKNEIERAAIIHYDGIRKPWLDIAMGRYRSYWTKYLNFDLPILQRCNLQA*

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