Glyma03g31510 - SoyBase

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Report for Sequence Feature Glyma03g31510

Feature Type:	gene_model
Chromosome:	Gm03
Start:	39393210
stop:	39397413
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g31510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02590	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr4:1137968-1140306 REVERSE LENGTH=310	SoyBase	E_val: 3.00E-129	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009567	GO-bp	Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR16223	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR16223:SF1	Panther	gb def: riken cdna 4933406n12 [mus musculus]	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7ICM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor UNE12 n=1 Tax=Medicago truncatula RepID=G7ICM9_MEDTR	SoyBase	E_val: 2.00E-157	ISS
UniRef100_I1JNY9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNY9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g31510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g31510

Paralog	Evidence	Comments
Glyma19g34360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g31510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g158500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g31510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g31510

Limit To All Plant Sequences

>Glyma03g31510.1   sequence type=CDS   gene model=Glyma03g31510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAATAACCCTTCCGACGCTCCCGCCGACGACTTCCTCGAACAAATTCTCGGCCTCCCGACCTTCGCTTCCGCCGACTCCGGCCTCTCCGCCGCCGATGTCGGCCTCGCCGGTGCGGCCACTCAGTCTCCGATGATGCTGCAGCTCAGCTCCGCCGACGCCAACGCTCACCTCGCCGGCGCATCCTTCCACGCGCCGGTGTACCAGCTAGGGCTGAGCTTGGAGCAGGGCAAAGGAAGATTCATGAAGCCCGACGAAGCCTCCGCTAGCGGAAAGCGCTTTCGCGACGACGTCGTTGATAATAGAGCTAAGCATGTTTTTCATGGGCAACCCATGCCTACTACTATGCCTGCTGCTCCTCATCCTCCAGCAATACGTCCTAGGGTGCGGGCCAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAACGATTGCGCAGAGAAAGAATAGCAGAAAGAATCAGGGCATTGCAAGAACTGGTTCCAAGTGTCAACAAGACAGATAGAGCAGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGACTGGGTGGAGCCGGTGCAGTGGCACCACTGGTAACTGACATTCCATTATCATCAGTCGAGGAAGAAGGTGGTGAAGGTGCGCGAAACCGGCCAGCTTGGGACAAGTGGTCGAACGATGGCACAGAAAGACAGGTAGCTAAGCTTATGGAAGAAAACGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAGGCTCTCTGCATCATGCCCATCTCACTGGCATCGGCAATATACCAGTCACAACCACCGGACACTTCTAGCATAGTCAAGCATGAAACTAGTCCTCCTTCCTAA

Predicted protein sequences of Glyma03g31510

Limit To All Plant Sequences

>Glyma03g31510.1   sequence type=predicted peptide   gene model=Glyma03g31510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANNPSDAPADDFLEQILGLPTFASADSGLSAADVGLAGAATQSPMMLQLSSADANAHLAGASFHAPVYQLGLSLEQGKGRFMKPDEASASGKRFRDDVVDNRAKHVFHGQPMPTTMPAAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNRPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKHETSPPS*

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