Glyma03g31500 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma03g31500): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma03g31500): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma03g31500

Feature Type:	gene_model
Chromosome:	Gm03
Start:	39385658
stop:	39390538
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g31500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02610	AT	Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein \| chr4:1147662-1149217 FORWARD LENGTH=275	SoyBase	E_val: 3.00E-156	ISS
GO:0000162	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan biosynthetic process	SoyBase	N/A	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006568	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan metabolic process	SoyBase	N/A	ISS
GO:0006730	GO-bp	Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004834	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tryptophan synthase activity	SoyBase	N/A	ISS
GO:0033984	GO-mf	Annotation by Michelle Graham. GO Molecular Function: indole-3-glycerol-phosphate lyase activity	SoyBase	N/A	ISS
KOG4175	KOG	Tryptophan synthase alpha chain	JGI		ISS
PTHR10314	Panther	PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILY	JGI		ISS
PTHR10314:SF4	Panther	THREONINE SYNTHASE	JGI		ISS
PF00290	PFAM	Tryptophan synthase alpha chain	JGI		ISS
UniRef100_B9S4R8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Trytophan synthase alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9S4R8_RICCO	SoyBase	E_val: 4.00E-157	ISS
UniRef100_I1JNY7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNY7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g31500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g31500 not represented in the dataset	Glyma03g31500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g31500

Paralog	Evidence	Comments
Glyma19g34350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g31500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g158400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g31500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g31500

Limit To All Plant Sequences

>Glyma03g31500.2   sequence type=transcript   gene model=Glyma03g31500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGACACAACATAGGAAAATACTATATAAATATTAGGCATTAGGGAAGGGTTGGACTTATGTTGCAACAGAGAGACAGAAAAAGGACTCACAATCACGAAGGAGAAGAAACCCAATAAGTGATTCTCATTTTTATGGCTCTTGCCCTGAAGTCAAGTTGCTTCTTGCAATTGAAGAAACCTGAGGCTGGTTTCAATGTTTGTTTTTCATCTAAGAAAGCTATAATCTCCGTGAAACGACACACTCCCGTGGCTGCTATCAGGACCATGGAAGCAGTGGGACTCTCTGCAACATTCACCAGGTTGAAAAAAGAAGGAAAAGTAGCTTTCATCCCGTATGTCACTGCTGGTGATCCTGACCTTTCAACCACAGCAGAAGCACTGAAAGTGCTTGATTCATGTGGGTCTGACATAATTGAGCTAGGTGTTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTGAATGCGATTATTGATATGTTGAAGGAGGTTGTTCCGCAACTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGATAAATTTATGTCCACTATAAGAGACAGTGGTGTACATGGGCTTGTAGTCCCAGATGTCCCTCTGGAGGAGACGGAAACTTTAAGGACAGAAGCTAAGAAACATGGAATTGAACTGGTACTCCTCACAACACCCACAACTCCAACAAACCGAATGAGAGCCATTGTTGATGTGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGAGCATCAGTTAGTGGTTCTGTTCAGTCTCTTTTGAAGGAAATTAAAGAGGCAACTACTAAACCTGTGGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGTGGTATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATAGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGATTGAAAGAACTTGAAGTTTTCACCCGCTCCTTAAAAGCGGCACTTCCTTAAAAAATATGTTTTAAGAGCTCGAACTTCATGTAGTTGTTGTCGTCATCGTAGATATTGGATTCAATAAAATGCGGTTCAGTTGTTTTTCTTCTGTTCATGATATAGTAGTTTTGACATTTTTATTTCCTTTTCAATTATGATTGGATTTCTTAGTTACTGAAATAAATGTCCCATATGAATTTCATCTCCTCACTCGTTG

Coding sequences of Glyma03g31500

Limit To All Plant Sequences

>Glyma03g31500.1   sequence type=CDS   gene model=Glyma03g31500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTGCCCTGAAGTCAAGTTGCTTCTTGCAATTGAAGAAACCTGAGGCTGGTTTCAATGTTTGTTTTTCATCTAAGAAAGCTATAATCTCCGTGAAACGACACACTCCCGTGGCTGCTATCAGGACCATGGAAGCAGTGGGACTCTCTGCAACATTCACCAGGTTGAAAAAAGAAGGAAAAGTAGCTTTCATCCCGTATGTCACTGCTGGTGATCCTGACCTTTCAACCACAGCAGAAGCACTGAAAGTGCTTGATTCATGTGGGTCTGACATAATTGAGCTAGGTGTTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTGAATGCGATTATTGATATGTTGAAGGAGGTTGTTCCGCAACTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGATAAATTTATGTCCACTATAAGAGACAGTGGTGTACATGGGCTTGTAGTCCCAGATGTCCCTCTGGAGGAGACGGAAACTTTAAGGACAGAAGCTAAGAAACATGGAATTGAACTGGTACTCCTCACAACACCCACAACTCCAACAAACCGAATGAGAGCCATTGTTGATGTGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGAGCATCAGTTAGTGGTTCTGTTCAGTCTCTTTTGAAGGAAATTAAAGAGGCAACTACTAAACCTGTGGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGTGGTATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATAGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGATTGAAAGAACTTGAAGTTTTCACCCGCTCCTTAAAAGCGGCACTTCCTTAA

>Glyma03g31500.2   sequence type=CDS   gene model=Glyma03g31500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTGCCCTGAAGTCAAGTTGCTTCTTGCAATTGAAGAAACCTGAGGCTGGTTTCAATGTTTGTTTTTCATCTAAGAAAGCTATAATCTCCGTGAAACGACACACTCCCGTGGCTGCTATCAGGACCATGGAAGCAGTGGGACTCTCTGCAACATTCACCAGGTTGAAAAAAGAAGGAAAAGTAGCTTTCATCCCGTATGTCACTGCTGGTGATCCTGACCTTTCAACCACAGCAGAAGCACTGAAAGTGCTTGATTCATGTGGGTCTGACATAATTGAGCTAGGTGTTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTGAATGCGATTATTGATATGTTGAAGGAGGTTGTTCCGCAACTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGATAAATTTATGTCCACTATAAGAGACAGTGGTGTACATGGGCTTGTAGTCCCAGATGTCCCTCTGGAGGAGACGGAAACTTTAAGGACAGAAGCTAAGAAACATGGAATTGAACTGGTACTCCTCACAACACCCACAACTCCAACAAACCGAATGAGAGCCATTGTTGATGTGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGAGCATCAGTTAGTGGTTCTGTTCAGTCTCTTTTGAAGGAAATTAAAGAGGCAACTACTAAACCTGTGGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGTGGTATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATAGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGATTGAAAGAACTTGAAGTTTTCACCCGCTCCTTAAAAGCGGCACTTCCTTAA

Predicted protein sequences of Glyma03g31500

Limit To All Plant Sequences

>Glyma03g31500.1   sequence type=predicted peptide   gene model=Glyma03g31500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALALKSSCFLQLKKPEAGFNVCFSSKKAIISVKRHTPVAAIRTMEAVGLSATFTRLKKEGKVAFIPYVTAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNLNAIIDMLKEVVPQLSCPIALFTYYNPILKRGTDKFMSTIRDSGVHGLVVPDVPLEETETLRTEAKKHGIELVLLTTPTTPTNRMRAIVDVAEGFVYLVSSVGVTGARASVSGSVQSLLKEIKEATTKPVAVGFGISKPEHVKQVVVWGADGVIVGSAIVKVLGEAKSPQEGLKELEVFTRSLKAALP*

>Glyma03g31500.2   sequence type=predicted peptide   gene model=Glyma03g31500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALALKSSCFLQLKKPEAGFNVCFSSKKAIISVKRHTPVAAIRTMEAVGLSATFTRLKKEGKVAFIPYVTAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNLNAIIDMLKEVVPQLSCPIALFTYYNPILKRGTDKFMSTIRDSGVHGLVVPDVPLEETETLRTEAKKHGIELVLLTTPTTPTNRMRAIVDVAEGFVYLVSSVGVTGARASVSGSVQSLLKEIKEATTKPVAVGFGISKPEHVKQVVVWGADGVIVGSAIVKVLGEAKSPQEGLKELEVFTRSLKAALP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain