Glyma03g31490 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g31490

Feature Type:	gene_model
Chromosome:	Gm03
Start:	39377250
stop:	39384405
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g31490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54610	AT	Annotation by Michelle Graham. TAIR10: histone acetyltransferase of the GNAT family 1 \| chr3:20213593-20217375 FORWARD LENGTH=568	SoyBase	E_val: 0	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0010015	GO-bp	Annotation by Michelle Graham. GO Biological Process: root morphogenesis	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0016573	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone acetylation	SoyBase	N/A	ISS
GO:0016579	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deubiquitination	SoyBase	N/A	ISS
GO:0043687	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-translational protein modification	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048522	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process	SoyBase	N/A	ISS
GO:0000123	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: histone acetyltransferase complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0004402	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone acetyltransferase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008080	GO-mf	Annotation by Michelle Graham. GO Molecular Function: N-acetyltransferase activity	SoyBase	N/A	ISS
GO:0010484	GO-mf	Annotation by Michelle Graham. GO Molecular Function: H3 histone acetyltransferase activity	SoyBase	N/A	ISS
PTHR22880	Panther	FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS	JGI		ISS
PTHR22880:SF6	Panther	HISTONE ACETYLTRANSFERASE GCN5	JGI		ISS
PF00439	PFAM	Bromodomain	JGI		ISS
PF00583	PFAM	Acetyltransferase (GNAT) family	JGI		ISS
UniRef100_B9S4R6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone acetyltransferase gcn5, putative n=1 Tax=Ricinus communis RepID=B9S4R6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JNY5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNY5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g31490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g31490

Paralog	Evidence	Comments
Glyma19g34340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g31490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g158300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g31490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g31490

Limit To All Plant Sequences

>Glyma03g31490.2   sequence type=transcript   gene model=Glyma03g31490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAGTTTTACAAAACCAACGCCGAACAAAGGACCAACGTGTTGGCACTGCAAAGTGCAAACAAGCTCGATCACTTGAATAACTCAGTCGAAGATTAGATTCAGATTCACGGCGAAAGAACAAAACCCTAAAAAAATGGATTTCCACGGCGGAGGACCACTCCGTTCCCGCAGTTCCCAGTCCCCTTCTCCCTCTCACTCCGCCTCCGCCTCCGCCACCTCCTCCATCCACAAGCGCAAGCTCGTGTCCGAGGACCACGCGCCTCCCTTCCCCCCCTCCTCCTTCTCCGCCGACACCCGCGACGGTGCCCTCACCTCCAACGACGACCTCGAGAGCATCTCCGCCCGCGGCGCCGACTCCGACTCCGACTCCGAATCCGAGGACGCCGTCGTCGACGACGACGAGGACGACTACGACAACGACAACGACAACGACTCCTCCATGCGCACCTTCACCGCCTCCAGGCTCAGCAACCCTCCCTCCGCTCCCCGCAACACCAAGCTCAAGACCGAAAACTCCACCGTCAAAATTGAGAATTCTGACGGCGCCAAAGACGCCGGAGCCGTCGGATCTGGCGCCGCCGCCGCCGCGGGACCGGTCCCCGGGATTGTGGTTAAGGAGGACCCGACTAAGATTTTTACTGATAATTTGCAAACCAGTGGGGCTTACACTGCCAGGGAGGAGAGTCTCAAGAAAGAGGAGGAAGCAGGAAAGCTCAAATTTGTATGCCTTTCAAACGATGGTGTTGATGAACATATGGTTTGGTTGATTGGATTGAAGAATATATTTGCTAGGCAACTTCCCAATATGCCCAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGCAATCACGTTGTTGGAGGCATTACATATCGCCCATATGCTAGCCAGAGGTTCGGTGAGATAGCCTTTTGTGCAATTACAGCTGATGAGCAAGTAAAGGGTTATGGTACCCGATTGATGAATCACTTAAAACAGTTTGCACGTGATATGGATGGGCTGACACATTTCCTCACATATGCTGACAATAATGCTGTTGGCTATTTTATCAAACAGGGATTTACAAAAGAGATTCACTTGGAGAAAGATCGATGGCAAGGTTATATAAAGGATTACGATGGAGGAATTCTCATGGAATGCAAGATTGATCCAAAGCTCCCTTACACTGATTTGTCAACTATGATCCGTCGTCAAAGGCAGGCAATTGATGAAAAAATCAGAGAGCTGTCAAACTGTCACATCGTTTATGCTGGAATTGATTTTCAGAAGAAAGAAGCTGGTATTCCTAAAAAAATTATTGATGACATCCCTGGTTTGAGTAAGTACTTAATTCCCAATCTGAGTTTAATAACTTGGCAGTAATTTTTGTTTGGTACCTACGGGAAAAACTATGCATTACCTGTCTTTGAAGATAGCATGCTTGGTGTCAATCTTTGTTATTTTTAGGTTTGCTAACTTTTGCTGAGATGTCAACCTCCTGTCCAAGTTCCTGTGCACAGGGGCTAACCTTTTTGCTGCTTAATGCTTATGACCTTGGTGTCAATCTTTCCCTATGTTACCTCGCTATAACTTTTTCATTGCCTCATACATTTGTTGTAGTTTTAGTGTTGATTTTGCATATCTAGATCAGTTTTCCTGTGATCTATGTAGGAAACCAGTGCTATGTTTGAAAGTTCTTTGAGCAAAAGGAAGGGAAGTCGCTTCCCTTGCTTTGGAGCCAAAATTTAAATAGTAGAGTGACATTATTTTTCTTTATTCAATTTAAAATACACCATGCCTTGAAACTCCAGTGGTAAGGATGGGGAGAACGCATCCCCTTCTTGTCTCATTCTCTCCTTAAAATTTTTCCAAACATGGGCTAGGTAACTTTATCCTCCCCCTGCCCTCCTTACCTCCCATCCAAACATGGCATAATAGATTTGTTTATCAACTGGGATGTTGTTAAAATATTGGCCCATATTGTCCTTATGAGTGAGATGGTT

Coding sequences of Glyma03g31490

Limit To All Plant Sequences

>Glyma03g31490.1   sequence type=CDS   gene model=Glyma03g31490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCCACGGCGGAGGACCACTCCGTTCCCGCAGTTCCCAGTCCCCTTCTCCCTCTCACTCCGCCTCCGCCTCCGCCACCTCCTCCATCCACAAGCGCAAGCTCGTGTCCGAGGACCACGCGCCTCCCTTCCCCCCCTCCTCCTTCTCCGCCGACACCCGCGACGGTGCCCTCACCTCCAACGACGACCTCGAGAGCATCTCCGCCCGCGGCGCCGACTCCGACTCCGACTCCGAATCCGAGGACGCCGTCGTCGACGACGACGAGGACGACTACGACAACGACAACGACAACGACTCCTCCATGCGCACCTTCACCGCCTCCAGGCTCAGCAACCCTCCCTCCGCTCCCCGCAACACCAAGCTCAAGACCGAAAACTCCACCGTCAAAATTGAGAATTCTGACGGCGCCAAAGACGCCGGAGCCGTCGGATCTGGCGCCGCCGCCGCCGCGGGACCGGTCCCCGGGATTGTGGTTAAGGAGGACCCGACTAAGATTTTTACTGATAATTTGCAAACCAGTGGGGCTTACACTGCCAGGGAGGAGAGTCTCAAGAAAGAGGAGGAAGCAGGAAAGCTCAAATTTGTATGCCTTTCAAACGATGGTGTTGATGAACATATGGTTTGGTTGATTGGATTGAAGAATATATTTGCTAGGCAACTTCCCAATATGCCCAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGCAATCACGTTGTTGGAGGCATTACATATCGCCCATATGCTAGCCAGAGGTTCGGTGAGATAGCCTTTTGTGCAATTACAGCTGATGAGCAAGTAAAGGGTTATGGTACCCGATTGATGAATCACTTAAAACAGTTTGCACGTGATATGGATGGGCTGACACATTTCCTCACATATGCTGACAATAATGCTGTTGGCTATTTTATCAAACAGGGATTTACAAAAGAGATTCACTTGGAGAAAGATCGATGGCAAGGTTATATAAAGGATTACGATGGAGGAATTCTCATGGAATGCAAGATTGATCCAAAGCTCCCTTACACTGATTTGTCAACTATGATCCGTCGTCAAAGGCAGGCAATTGATGAAAAAATCAGAGAGCTGTCAAACTGTCACATCGTTTATGCTGGAATTGATTTTCAGAAGAAAGAAGCTGGTATTCCTAAAAAAATTATTGATGACATCCCTGGTTTGAGAGAGGCTGGGTGGACTCCTGATCAGTGGGGTCATTCACGATTCAGAACTTTAAATGTTTCTTCTGACAATGCTACTAATCAAAAACATTTGAATGGGTTTATGCGTTCACTTCTAAAGTCAATGTTCGATCACGCTGATGCTTGGCCATTCAAGGAACCAGTTGATGCACGGGATGTCCCTGATTATTATGACATCATCAAAGATCCAATGGATTTGAAGACAATGTCTAAGAGGGTGGATTCAGAGCAATATTATGTAACATTTGAGATGTTTGTTGCGGATGCCAGAAGAATGTTTGCGAATGCACGCACCTATAATTCTCCAGAAACCATTTATTACAAATGTTCTACAAGGTTAGAAGCCCACTTTCAAAGCAAAGTGCAAGCAGGCCTCCAGCCTGGTACCAAAATTCAGTAG

>Glyma03g31490.2   sequence type=CDS   gene model=Glyma03g31490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCCACGGCGGAGGACCACTCCGTTCCCGCAGTTCCCAGTCCCCTTCTCCCTCTCACTCCGCCTCCGCCTCCGCCACCTCCTCCATCCACAAGCGCAAGCTCGTGTCCGAGGACCACGCGCCTCCCTTCCCCCCCTCCTCCTTCTCCGCCGACACCCGCGACGGTGCCCTCACCTCCAACGACGACCTCGAGAGCATCTCCGCCCGCGGCGCCGACTCCGACTCCGACTCCGAATCCGAGGACGCCGTCGTCGACGACGACGAGGACGACTACGACAACGACAACGACAACGACTCCTCCATGCGCACCTTCACCGCCTCCAGGCTCAGCAACCCTCCCTCCGCTCCCCGCAACACCAAGCTCAAGACCGAAAACTCCACCGTCAAAATTGAGAATTCTGACGGCGCCAAAGACGCCGGAGCCGTCGGATCTGGCGCCGCCGCCGCCGCGGGACCGGTCCCCGGGATTGTGGTTAAGGAGGACCCGACTAAGATTTTTACTGATAATTTGCAAACCAGTGGGGCTTACACTGCCAGGGAGGAGAGTCTCAAGAAAGAGGAGGAAGCAGGAAAGCTCAAATTTGTATGCCTTTCAAACGATGGTGTTGATGAACATATGGTTTGGTTGATTGGATTGAAGAATATATTTGCTAGGCAACTTCCCAATATGCCCAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGCAATCACGTTGTTGGAGGCATTACATATCGCCCATATGCTAGCCAGAGGTTCGGTGAGATAGCCTTTTGTGCAATTACAGCTGATGAGCAAGTAAAGGGTTATGGTACCCGATTGATGAATCACTTAAAACAGTTTGCACGTGATATGGATGGGCTGACACATTTCCTCACATATGCTGACAATAATGCTGTTGGCTATTTTATCAAACAGGGATTTACAAAAGAGATTCACTTGGAGAAAGATCGATGGCAAGGTTATATAAAGGATTACGATGGAGGAATTCTCATGGAATGCAAGATTGATCCAAAGCTCCCTTACACTGATTTGTCAACTATGATCCGTCGTCAAAGGCAGGCAATTGATGAAAAAATCAGAGAGCTGTCAAACTGTCACATCGTTTATGCTGGAATTGATTTTCAGAAGAAAGAAGCTGGTATTCCTAAAAAAATTATTGATGACATCCCTGGTTTGAGTAAGTACTTAATTCCCAATCTGAGTTTAATAACTTGGCAGTAA

Predicted protein sequences of Glyma03g31490

Limit To All Plant Sequences

>Glyma03g31490.1   sequence type=predicted peptide   gene model=Glyma03g31490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFHGGGPLRSRSSQSPSPSHSASASATSSIHKRKLVSEDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDSESEDAVVDDDEDDYDNDNDNDSSMRTFTASRLSNPPSAPRNTKLKTENSTVKIENSDGAKDAGAVGSGAAAAAGPVPGIVVKEDPTKIFTDNLQTSGAYTAREESLKKEEEAGKLKFVCLSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYASQRFGEIAFCAITADEQVKGYGTRLMNHLKQFARDMDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYAGIDFQKKEAGIPKKIIDDIPGLREAGWTPDQWGHSRFRTLNVSSDNATNQKHLNGFMRSLLKSMFDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVDSEQYYVTFEMFVADARRMFANARTYNSPETIYYKCSTRLEAHFQSKVQAGLQPGTKIQ*

>Glyma03g31490.2   sequence type=predicted peptide   gene model=Glyma03g31490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFHGGGPLRSRSSQSPSPSHSASASATSSIHKRKLVSEDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDSESEDAVVDDDEDDYDNDNDNDSSMRTFTASRLSNPPSAPRNTKLKTENSTVKIENSDGAKDAGAVGSGAAAAAGPVPGIVVKEDPTKIFTDNLQTSGAYTAREESLKKEEEAGKLKFVCLSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYASQRFGEIAFCAITADEQVKGYGTRLMNHLKQFARDMDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYAGIDFQKKEAGIPKKIIDDIPGLSKYLIPNLSLITWQ*

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