SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G03055 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:710102-711763 REVERSE LENGTH=264 | SoyBase | E_val: 5.00E-59 | ISS |
| GO:0010223 | GO-bp | Annotation by Michelle Graham. GO Biological Process: secondary shoot formation | SoyBase | N/A | ISS |
| GO:1901601 | GO-bp | Annotation by Michelle Graham. GO Biological Process: strigolactone biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_C7AU21 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DWARF27 n=2 Tax=Oryza sativa Japonica Group RepID=C7AU21_ORYSJ | SoyBase | E_val: 7.00E-66 | ISS |
| UniRef100_UPI0002336D4E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336D4E related cluster n=1 Tax=unknown RepID=UPI0002336D4E | SoyBase | E_val: 2.00E-162 | ISS |
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Glyma03g31451 not represented in the dataset |
Glyma03g31451 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g34295 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
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| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g31451.1 sequence type=CDS gene model=Glyma03g31451 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATAGAAATTGTTTTAGCCTTACCAAGAAGAGTTCAGCACTATGTTTAACTCACTGGAACCCCATCAAACGTAAGCCAGAACATCCTTGTGTGGTTGCAATGCTCAGAACACCCTCAGACAACATCACAGGAGAAACAAGAAAAACTAATGCCTACAAAGATAACTTGTTTGATCGTTTAGCAATACACCATCTTTCAAAAAGCGTTCAAGAAGCCACGGGACTCGGTAACAATAAGAGTGGGTATGAGAGCTTGGTTGAGGCAGCTACTGTGGCTAAAATGAAATTTGATCCTATTCAGCAGCAAGAGGTTATCATTCAAGCTCTTCACAGAGCCTTCCCAAAGCCAATACTTTCATTGATAAAGACACTGCTACCACCATCTAAACTCTCAAGGGAATATTTTGCCGTTTTCACCACTTTGTTCTTTGCTTGGTTTTTAGAGGAGACAAATTGTGTAGGGATGTGTATTAATCTCTGCAAAATGCCATCTCAATCGTTTATAAAGGACACTCTGGGGATGCCAGTCAACATGGTGCCCAATTTTGACGACATGAGTTGTGAGATGATATTTGGACAGGAGCCTCCAGCATCAACCGATGATCCAGCACTGAAGCAACCATGCTATAAACTATGCAAGGCATATAAAAAGCATGGAACAGACTGCCTCAGTAGTTAA
>Glyma03g31451.1 sequence type=predicted peptide gene model=Glyma03g31451 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRNCFSLTKKSSALCLTHWNPIKRKPEHPCVVAMLRTPSDNITGETRKTNAYKDNLFDRLAIHHLSKSVQEATGLGNNKSGYESLVEAATVAKMKFDPIQQQEVIIQALHRAFPKPILSLIKTLLPPSKLSREYFAVFTTLFFAWFLEETNCVGMCINLCKMPSQSFIKDTLGMPVNMVPNFDDMSCEMIFGQEPPASTDDPALKQPCYKLCKAYKKHGTDCLSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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