Glyma03g31281 - SoyBase

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Report for Sequence Feature Glyma03g31281

Feature Type:	gene_model
Chromosome:	Gm03
Start:	39180156
stop:	39185097
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g31281

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63250	AT	Annotation by Michelle Graham. TAIR10: homocysteine methyltransferase 2 \| chr3:23370575-23372587 REVERSE LENGTH=333	SoyBase	E_val: 7.00E-96	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0033528	GO-bp	Annotation by Michelle Graham. GO Biological Process: S-methylmethionine cycle	SoyBase	N/A	ISS
GO:0043687	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-translational protein modification	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008898	GO-mf	Annotation by Michelle Graham. GO Molecular Function: homocysteine S-methyltransferase activity	SoyBase	N/A	ISS
PTHR21091	Panther	METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED	JGI		ISS
PTHR21091:SF6	Panther	5-METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE	JGI		ISS
PF02574	PFAM	Homocysteine S-methyltransferase	JGI		ISS
UniRef100_F8QPI4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Selenocysteine methyltransferase n=1 Tax=Astragalus chrysochlorus RepID=F8QPI4_9FABA	SoyBase	E_val: 4.00E-109	ISS
UniRef100_UPI000233A336	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A336 related cluster n=1 Tax=unknown RepID=UPI000233A336	SoyBase	E_val: 5.00E-146	ISS

Expression Patterns of Glyma03g31281

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g31281 not represented in the dataset	Glyma03g31281 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g31281

Paralog	Evidence	Comments
Glyma19g34120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g31281 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g156500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g31281

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g31281

Limit To All Plant Sequences

>Glyma03g31281.2   sequence type=transcript   gene model=Glyma03g31281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAATTCGAAGATAAAGGTATAAATCCAAAAATGCGGGAATTCCAGTTCCTCTTTCCGGCGTAAAAATGTCGTCGTTGATAACAGATTTGCTCCGTGAAACCGGCGGCTCCGCCGTCATCGACGGCGGTCTCGCGACGGAGCTGGAGCGCCATGGCGACGACCTCAACGATCCCCTATGGAGCGCCAAATGCCTGTTTTCCTCCCCTCACCTGATTCGCCAGGTGCACCTTGATTACCTGGAAAATGGTGCAGACATTATAATCACAGCATCTTACCAAGCCACCATTCAAGGCTTTAAAGCCAAAGGTTATTCTGATGAAGAGAGTGAAGCCTTGCTCAAGAGGAGTGCCGAAATTGCATTCGAGGCACGTGAAGTTTACGATAAAAATTGTGCTGGATGCTGTTCGGGTGATGGGGAGGATGATGGTAGAATCCTCAAGCAACGGCCTATCCTGGTTGCAGCATTGGTGGGGAGCTATGGAGCTTATTTGGCCGATGGATCAGGGTACAGTGGGGATTATGGTGATGCTATCACGGTGGAAATTCGGAGAAGAGTTCAAATTTTAGCAGATTCAAGTGCTGACCTGCTTGCATTTGAAACAGTGTCCAATAAGCTTGAAGCTGAGGCTTTTGCTCAGCTTCTGGAAGAAGAGGACATAAAGATTCCAGCATGGTTTTCTTTTAACTCATGGAGTTAATGTTGTTAGTGGTGATTCTTTAATGGAATGTGGCTCTATTGCTGAATCAGGTGACTACAAAACCAATTGTTATATATCCAAACAGTGGGGAAACTTACGATGCTGACCTAAAGGAGTGGGTGCAAAATACTGGTGTTACAGATGAAGATTTTATCTCATATGTAAATAAATGGTGAGTTAGGAGCTTCCTGTGTAGGTGGCTGTTGCAGAACGACTCCAGATACTATTAGGAAGATATACAGGACACTGTCTAGTAGTCAATCAATCTAATTTACTTGTCAAGAAGGCTGGCAGCTGCACTGGATCAAGTTGCTTCTGACTAAGATTGGCAATAAATATATATGATATGATTTGGCTAATTAGCCAAGATATCCATTATGAAATATTGGTCAATGCAACTTGGAATATGCTTTGCCCTTGGAGCTAACAACCTGAAAATCGCAATTTGTGATCAAGAGAAAGATGCGTGTTCTCCTTCTCGTCGATTTTGAAAAAAAAAAAAAAAAAAGAACATGGCAACTTATGCAGAATTTTAGTAATTGTTATGTTTATTATAACAGAATTTAGGATTATTAGTATCTTAAACATTTTCCCAACCAAAAATCATGTTGACTGGAGACTCACGAGCTGAACACTCATGGTCTCCTATCTTTTTGTCTGTTTTGTTCCTTATTTTTTTACGTGCAATATTTTCATTTTTAAATTTTAATCTTAAAA

Coding sequences of Glyma03g31281

Limit To All Plant Sequences

>Glyma03g31281.1   sequence type=CDS   gene model=Glyma03g31281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCGTAAAAATGTCGTCGTTGATAACAGATTTGCTCCGTGAAACCGGCGGCTCCGCCGTCATCGACGGCGGTCTCGCGACGGAGCTGGAGCGCCATGGCGACGACCTCAACGATCCCCTATGGAGCGCCAAATGCCTGTTTTCCTCCCCTCACCTGATTCGCCAGGTGCACCTTGATTACCTGGAAAATGGTGCAGACATTATAATCACAGCATCTTACCAAGCCACCATTCAAGGCTTTAAAGCCAAAGGTTATTCTGATGAAGAGAGTGAAGCCTTGCTCAAGAGGAGTGCCGAAATTGCATTCGAGGCACGTGAAGTTTACGATAAAAATTGTGCTGGATGCTGTTCGGGTGATGGGGAGGATGATGGTAGAATCCTCAAGCAACGGCCTATCCTGGTTGCAGCATTGGTGGGGAGCTATGGAGCTTATTTGGCCGATGGATCAGGGTACAGTGGGGATTATGGTGATGCTATCACGGTGGAAATTCGGAGAAGAGTTCAAATTTTAGCAGATTCAAGTGCTGACCTGCTTGCATTTGAAACAGTGTCCAATAAGCTTGAAGCTGAGGCTTTTGCTCAGCTTCTGGAAGAAGAGGACATAAAGATTCCAGCATGGTTTTCTTTTAACTCATGGAGTTAA

>Glyma03g31281.2   sequence type=CDS   gene model=Glyma03g31281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGTTGATAACAGATTTGCTCCGTGAAACCGGCGGCTCCGCCGTCATCGACGGCGGTCTCGCGACGGAGCTGGAGCGCCATGGCGACGACCTCAACGATCCCCTATGGAGCGCCAAATGCCTGTTTTCCTCCCCTCACCTGATTCGCCAGGTGCACCTTGATTACCTGGAAAATGGTGCAGACATTATAATCACAGCATCTTACCAAGCCACCATTCAAGGCTTTAAAGCCAAAGGTTATTCTGATGAAGAGAGTGAAGCCTTGCTCAAGAGGAGTGCCGAAATTGCATTCGAGGCACGTGAAGTTTACGATAAAAATTGTGCTGGATGCTGTTCGGGTGATGGGGAGGATGATGGTAGAATCCTCAAGCAACGGCCTATCCTGGTTGCAGCATTGGTGGGGAGCTATGGAGCTTATTTGGCCGATGGATCAGGGTACAGTGGGGATTATGGTGATGCTATCACGGTGGAAATTCGGAGAAGAGTTCAAATTTTAGCAGATTCAAGTGCTGACCTGCTTGCATTTGAAACAGTGTCCAATAAGCTTGAAGCTGAGGCTTTTGCTCAGCTTCTGGAAGAAGAGGACATAAAGATTCCAGCATGGTTTTCTTTTAACTCATGGAGTTAA

Predicted protein sequences of Glyma03g31281

Limit To All Plant Sequences

>Glyma03g31281.1   sequence type=predicted peptide   gene model=Glyma03g31281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GVKMSSLITDLLRETGGSAVIDGGLATELERHGDDLNDPLWSAKCLFSSPHLIRQVHLDYLENGADIIITASYQATIQGFKAKGYSDEESEALLKRSAEIAFEAREVYDKNCAGCCSGDGEDDGRILKQRPILVAALVGSYGAYLADGSGYSGDYGDAITVEIRRRVQILADSSADLLAFETVSNKLEAEAFAQLLEEEDIKIPAWFSFNSWS*

>Glyma03g31281.2   sequence type=predicted peptide   gene model=Glyma03g31281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSLITDLLRETGGSAVIDGGLATELERHGDDLNDPLWSAKCLFSSPHLIRQVHLDYLENGADIIITASYQATIQGFKAKGYSDEESEALLKRSAEIAFEAREVYDKNCAGCCSGDGEDDGRILKQRPILVAALVGSYGAYLADGSGYSGDYGDAITVEIRRRVQILADSSADLLAFETVSNKLEAEAFAQLLEEEDIKIPAWFSFNSWS*

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