Glyma03g31230 - SoyBase

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Report for Sequence Feature Glyma03g31230

Feature Type:	gene_model
Chromosome:	Gm03
Start:	39142837
stop:	39147783
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g31230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63220	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr3:23357540-23358577 REVERSE LENGTH=345	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24414	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24414:SF184	Panther		JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
PF01344	PFAM	Kelch motif	JGI		ISS
UniRef100_A9PAC1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=A9PAC1_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1JNW3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNW3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g31230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g31230

Paralog	Evidence	Comments
Glyma19g34080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g31230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g156000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g31230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g31230

Limit To All Plant Sequences

>Glyma03g31230.1   sequence type=CDS   gene model=Glyma03g31230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGACTGATTGAAAGACTTCCTGATGCTGTTGCAATTAGGTGCCTTGCACGTGTTCCCTTCTACTTTCACCCAGTGTTAGAGCTTGTCTCTCGTTCTTGGCAAGCAGCTATTCGTAGCCCTGAACTATTTAAAGCTCGGCAGGAGGTTGGTTCAACTGAGGATCTGTTATGTGTCTGTGCTTTTGATCCAGAGAACTTATGGCAGTTGTATGACCCTATGCGAGATCTCTGGATTACACTCCCTGTTCTTCCCTCAAAGATCAGGCACCTTTCCAACTTTGGTGCTGTTTCCACTGCTGGAAAGTTGTTTGTGATTGGTGGTGGAAGTGATGCTGTTGATCCTTTGACTGGTGACCAAGATGGTTGTTTTGCAACAGATGAAGTTTGGTCATATGACCCTGTAGTCCGGCAGTGGGCCCCTCGTGCGTCAATGCTTGTTCCCCGTTCTATGTTTGCATGCTGCGTTTTGAATGGAAAAATTGTTGTGGCTGGGGGCTTCACTAGCTGCAGAAAATCAATATCTCAAGCAGAAATGTATGATCCTGACAAGGATGTTTGGATTCCAATGCCTGATCTTCATCGCACTCATAATTCAGCCTGTTCGGGGGTAGTGATTGGTGGGAAGGTGCATGTACTGCACAAGGATTTGTCAACAGTGCAAGTTTTAGACAATGCAGGGCCCGGTTGGACCGTTGAGGAATGCGTGTGGCTCCAAGGGCAGATGGCAGTTGTCGGCGATGCACTTTATGTAATGAGCCATGGATTAATCTTCAAGCAGGACAAAGAAGTGAGAAAGGTTGTAGGTTCAGCATCCGAGTTTCGAAAGAGAATTGGCTTTGCAATGACTGGACTAGGTGATGACTTATACGTGATTGGAGGCTTCATTGGACCAGATAGATGGAATTGGGACATTAAGCCATTATCCGAAGTTGATGTTCTCACACTTGGAAGTGAGAGACCAACTTGGCGCCAAGCAGCTCCGATGACACGGTGTCATGGTCCTATTCTTGGTTGTACGCTGCTGAGAATTTAG

Predicted protein sequences of Glyma03g31230

Limit To All Plant Sequences

>Glyma03g31230.1   sequence type=predicted peptide   gene model=Glyma03g31230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGLIERLPDAVAIRCLARVPFYFHPVLELVSRSWQAAIRSPELFKARQEVGSTEDLLCVCAFDPENLWQLYDPMRDLWITLPVLPSKIRHLSNFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFATDEVWSYDPVVRQWAPRASMLVPRSMFACCVLNGKIVVAGGFTSCRKSISQAEMYDPDKDVWIPMPDLHRTHNSACSGVVIGGKVHVLHKDLSTVQVLDNAGPGWTVEECVWLQGQMAVVGDALYVMSHGLIFKQDKEVRKVVGSASEFRKRIGFAMTGLGDDLYVIGGFIGPDRWNWDIKPLSEVDVLTLGSERPTWRQAAPMTRCHGPILGCTLLRI*

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