Glyma03g31220 - SoyBase

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Report for Sequence Feature Glyma03g31220

Feature Type:	gene_model
Chromosome:	Gm03
Start:	39137923
stop:	39140771
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g31220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03110	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr1:749359-751796 FORWARD LENGTH=427	SoyBase	E_val: 5.00E-175	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006400	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA modification	SoyBase	N/A	ISS
GO:0008618	GO-bp	Annotation by Michelle Graham. GO Biological Process: 7-methylguanosine metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
PTHR16288	Panther	WD40 REPEAT PROTEIN 4	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_B9SFJ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SFJ3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JNW2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNW2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g31220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g31220

Paralog	Evidence	Comments
Glyma19g34071	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g31220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g155900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g31220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g31220

Limit To All Plant Sequences

>Glyma03g31220.1   sequence type=CDS   gene model=Glyma03g31220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCGAATCCAAGAACGACACCCAAGTCGCTCCGGCCTTAATCGCCGTTCACCCCGACCAATCCTCCGTCGCCGTCGCAGTGGGCCCGCACCTCCGGGTCTTCGACCTCCTTAGCGGTTCTGCAGCTTCTTTAACCGACGACTCTGATGGCGCCGTCCCGTTCCACAAGGACAACATCAGAGCCATTCGCTTCGGCGCAAAAGGAAAACTCTTCGTGTCCGCAGGTGACGATAAAACCCTCAAGGTCTGGTCAACACAGTCCTGGCGTTGCATCACCACCGTGTCCTCCGAGAAGAGAGTAACTGCAGTAGCAATCAGCGACGACGGAACATTCGTGTGCTTCGCCGACAAATTCGGCGTTGTTTGGGTTGTGGATCTCGATCCTCCGTTACACGATGATAAGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGGAATTTTCACCGGATGGTCGCTATATTTTAAGCGCAGATCGTGATTTCAAAATTCGAGTTACTAATTTTCCCAAGAAGCCTTTAAATGGAGCTCAACAGATACAAAGTTTCTGTCTCGGTCATACAGAGTTTGTTTCCTGCCTTGCCTTCATTCAGGCTCAGGAATGCCCTCAAGGCTTTCTTCTATCTGGCAGTGGTGATTCCACAGTTCGATTGTGGAATATTGACTCTGGAGCACTTCTTGATACTTGCGAGGTTGCAATTAAGGCAGGTCTTTTAGAGTCTAATGGTAAGGCCGAGGAGCGTGGCCATGCTGTTACTGATTTATGTACCGTACTGGATGGTTTGCTTGTTGCAGTGGCCATTCAGAGCTTGCAAGGAATAGTATTGTTGAGTTGCAATGTTTCTGCACAAACTCTTTCCGTTGCCAAGGTGGTTTCTGTTGCTGGAGAGGCCTTTGTCCCTACCTGCTTGGGGAGCAGCCCATCTATAGGGAAATTGTGGATGGTTACAGGTGTCTCTGGTCTACCTGGTTTTAATTATCCCTCTTTGGCTTGTGTGCGAGTAATTTCCAGTATTGATGTTGAGAAAGAGCCAGTTGTTCTGGGAGATGATAACATTCCTGGGGGAGAAAAACTACTAGAAACGTTGCAAGGATCTGCATCCGTTGATGACAATGCTTTTCTAGCAGCAGCTGAAGCAGTCAAAACAGCAATGTGCAACCTATTGATAAAAAAACAATACCCTTCAGAGAATAGAGAATATAGGAAGAAAAGCAGAAATGATAGAAAACTCAAGGGTTAG

Predicted protein sequences of Glyma03g31220

Limit To All Plant Sequences

>Glyma03g31220.1   sequence type=predicted peptide   gene model=Glyma03g31220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESESKNDTQVAPALIAVHPDQSSVAVAVGPHLRVFDLLSGSAASLTDDSDGAVPFHKDNIRAIRFGAKGKLFVSAGDDKTLKVWSTQSWRCITTVSSEKRVTAVAISDDGTFVCFADKFGVVWVVDLDPPLHDDKKPAPLLSHYCSIITSLEFSPDGRYILSADRDFKIRVTNFPKKPLNGAQQIQSFCLGHTEFVSCLAFIQAQECPQGFLLSGSGDSTVRLWNIDSGALLDTCEVAIKAGLLESNGKAEERGHAVTDLCTVLDGLLVAVAIQSLQGIVLLSCNVSAQTLSVAKVVSVAGEAFVPTCLGSSPSIGKLWMVTGVSGLPGFNYPSLACVRVISSIDVEKEPVVLGDDNIPGGEKLLETLQGSASVDDNAFLAAAEAVKTAMCNLLIKKQYPSENREYRKKSRNDRKLKG*

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