Glyma03g31130 - SoyBase

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Report for Sequence Feature Glyma03g31130

Feature Type:	gene_model
Chromosome:	Gm03
Start:	39046319
stop:	39051075
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g31130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03140	AT	Annotation by Michelle Graham. TAIR10: splicing factor Prp18 family protein \| chr1:754471-756223 REVERSE LENGTH=420	SoyBase	E_val: 0	ISS
GO:0008380	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005681	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: spliceosomal complex	SoyBase	N/A	ISS
KOG2808	KOG	U5 snRNP-associated RNA splicing factor	JGI		ISS
PTHR13007	Panther	PRE-MRNA SPLICING FACTOR-RELATED	JGI		ISS
PTHR13007:SF6	Panther	POTASSIUM CHANNEL REGULATORY FACTOR	JGI		ISS
PF02840	PFAM	Prp18 domain	JGI		ISS
PF08799	PFAM	pre-mRNA processing factor 4 (PRP4) like	JGI		ISS
UniRef100_B9S407	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Potassium channel regulatory factor, putative n=1 Tax=Ricinus communis RepID=B9S407_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JNV3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNV3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g31130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g31130

Paralog	Evidence	Comments
Glyma19g33970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g31130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g155000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g31130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g31130

Limit To All Plant Sequences

>Glyma03g31130.1   sequence type=CDS   gene model=Glyma03g31130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCTACTGAAGCAAGAGCTTCTCAAGAAGCGCCAATCCCTGGCGCAAGACACCGGCGGCAAGAAATTCTTCAAGCGCTCCGAGATCCAGCAGAAGGAAATCCAGAAACTCCGGGAGCAAGAGAAGCGCGAATTGGAAGCCAAGTCACAGAAGCGCCTCGCAACGTCCTCCGACAACGCTGCCACCGCTCCGTCCTCCTCATCCACCGCCTCCGCCTCGGCCTCTTCCACAATCGCATCCTCCTCCGCCGCCTCCCTCACCAACGAGCAAAACATCGACAACCTCGTCCTCCCAAAGCCCGAAGTCATCCGCCGCCTCCGCTTCCTCAAGCAGCCGGTCACGCTCTTCGGCGAAGACGACGACGCCAGGCTGGACCGCCTGAAGTATGTCCTCAAGGCCGGCGTCTTCGAGGTTGACAGCGACATGACGGAGGGGCAGACCAACGATTTCCTGCGCGACATCGCGGAGCTCAGGAAGCGCCAGAAGACCGGGATTCTCGGCGAGAGGAAGCGCCAGAAGGCCGACGACGGCGCCGCTGAGGACCGCGAGGGCGGCGCCGGAGATGATGACTTGAGTGACTGCGGCGGCTCCGATGGTGCCGATGCGGACAAGGACTTGAAGCGGATGAAGGCGAATTTCGAGGAGCTTTGCGATGAGGATAAGATTCTGGTGTTCTTTAAGAAGCTGTTGAATGAGTGGAAGCAGGAGTTGCGCGAGATGCCTGAGGCGGAGAAGCGCACGGCCAAGGGGAAGTCCATGGTTGCCACTTTCAAGCAGTGTGCGCGTTACTTGAACCCGCTGTTTAAGTTTTGCAGGAAGAAGGTTCTTCCGGATGACATTCGACAGGCGTTATTGTTGATGGTTGAATGCTGTATGAGGCGAGATTATCTGGCTGCAATGGACCATTATATCAAGCTGGCTATCGGGAATGCACCCTGGCCTATTGGTGTCACTATGGTTGGTATTCACGAAAGATCTGCCCGTGAAAAGATCTACACCAACAGTGTTGCTCACATCATGAATGATGAGACCACTCGCAAATACTTGCAATCTGTGAAGAGATTAATGACATTTTGCCAACGCCGTTATCCGACATTGCCTTCTAAAGCCGTTGAGTTCAATAGTTTGGCAAATGGCAGTGATTTGCATTCACTTCTAGCAGAAGAGAGATTTAGTGGGGGCAATCAGGCGGCATCTGAAGAGAGGCTTAGGATAATGCCTGCTCCAAGAGACAGCTAG

Predicted protein sequences of Glyma03g31130

Limit To All Plant Sequences

>Glyma03g31130.1   sequence type=predicted peptide   gene model=Glyma03g31130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLLKQELLKKRQSLAQDTGGKKFFKRSEIQQKEIQKLREQEKRELEAKSQKRLATSSDNAATAPSSSSTASASASSTIASSSAASLTNEQNIDNLVLPKPEVIRRLRFLKQPVTLFGEDDDARLDRLKYVLKAGVFEVDSDMTEGQTNDFLRDIAELRKRQKTGILGERKRQKADDGAAEDREGGAGDDDLSDCGGSDGADADKDLKRMKANFEELCDEDKILVFFKKLLNEWKQELREMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALLLMVECCMRRDYLAAMDHYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTLPSKAVEFNSLANGSDLHSLLAEERFSGGNQAASEERLRIMPAPRDS*

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