Glyma03g31080 - SoyBase

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Report for Sequence Feature Glyma03g31080

Feature Type:	gene_model
Chromosome:	Gm03
Start:	38968330
stop:	38975374
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g31080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02780	AT	Annotation by Michelle Graham. TAIR10: Terpenoid cyclases/Protein prenyltransferases superfamily protein \| chr4:1237881-1244766 REVERSE LENGTH=802	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009686	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0009905	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ent-copalyl diphosphate synthase activity	SoyBase	N/A	ISS
GO:0010333	GO-mf	Annotation by Michelle Graham. GO Molecular Function: terpene synthase activity	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
PF01397	PFAM	Terpene synthase, N-terminal domain	JGI		ISS
PF03936	PFAM	Terpene synthase family, metal binding domain	JGI		ISS
UniRef100_B9GSM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Copalyl diphosphate synthase n=1 Tax=Populus trichocarpa RepID=B9GSM9_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1JNU8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JNU8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g31080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g31080

Paralog	Evidence	Comments
Glyma19g33921	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g31080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g154400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g31080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g31080

Limit To All Plant Sequences

>Glyma03g31080.2   sequence type=CDS   gene model=Glyma03g31080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCTCAGTTGTCATTCATTCTCAGTCACAGGCTTCCTCCTTCATGTGCGAGACCTGCAGCAAAATCCTGTGTCACTCTCAATTTTTCCACTCCATCACCTTATAATATTTTCGGGGCATGTGTTGCTGAGGTGCCTCAGGATAATATTTTGAAGGATGATATTATAGACGAGGGAGCTGTTAACCAGGTTTTGGTTACAAACCAGATACGGAAAAAAATAAATGTGATCAAATTGATGTTGTATTCCAAAGAAGATGGAGAAATATCAATATCAGCTTATGACACGGCATGGGTTGCCCTAGTGAAAAATGTTGATCTGGGTGGAAATTCACCTCAATTCCCGTCCTGTCTTGAATGGATTGCAAATAATCAGCTACCTGATGGCTCCTGGGGAGACTCTGAAATATTCTTAGCCCATGATCGTATGCTTAACACGTTAGCTTGTGTTATTGCATTAAGATCATGGAACATGCACCCTGAAAAGTGCGAGAAGGGAATGACATTTTTTAAGGAGAATTTGTACAAGCTTCAGGATGAAAATGCAGAGCATATGCCTATCGGGTTTGAAGTTGCTTTCCCCTCTCTTCTCGATCTTGCAAGAAGTTTGAATATTGAAGTGCCAGATGAGTCTCGTATCTTGAAAAACATCTTTGCAATGAGGGACCTCAAGCTTAAGAAAATACCAAGAGAAGTTCTGCACAAGGTGCCTACAACACTGCTCCATAGTTTGGAGGGAATGCCAAACTTAGATTGGAAGCAGCTTCTAAAGTTGCAGTCCCAAGACGGATCGTTCTTGTTCTCTCCATCCTCTACAGCTTATGCTCTCATGCAAACTAAGGATGGAAATGCTCACAAATACCTTGAAAAGACGGTCCAGAGGTTCAATGGGGGAGTTCCAAATGTTTACCCAGTGGATTTGTTTGAACGCATATGGGTTTTCGATAGACTTGATCGTCTTGGAATTTCAAGATATTTTCAGTCAGAGATCAAAGATTATGTGGCTTATGTTTCAAGATATTGGACTGAGAAGGGTATTTGCTGGGCAAGGAATTCGGAGGTTCAAGATATAGATGACACAGCAATGGGATTTAGACTACTAAGGTTGCATGGGCATCAAGTTTCGCCCAGTGTGTTTGAGCAATTTAAGAAAAATGGCGAATTCTTCTGCTTTTCTGGGCAGTCAAACCAAGCTGTGACAGGAATGTTTAATCTTTATCGAGCATCTCAAGTGCTATTTCAAGGAGAGAAGATTCTTGAGGATGCCAAGAACTTCTCTGCCAAATTTTTAACTGAGAAACGTGCAGCAAACGGGCTCCTAGATAAATGGATCATAACCAAAGATTTACCTGGCGAGGTGAGTTATGCATTGGATGTGCCATGGTATGCCAGCTTACCCAGACTGGAGACAAGATTTTACCTTGAACAATATGGTGGTAGCAGTGACGTTTGGATTGGCAAGACCCTTTACAGGATGCCTTACGTGAACAATGATGTTTATCTCGAGCTTGCAAAATTGGATTACAACAACTGTCAAGCAGTGCATTGTGCGGAATGGGAAAAAATTCAAAGGTGGTACTCTGAAGCAGGACTAGAGGAGTTTGGGTTGAGCAAAGAAAGTCTCCTATCTGCTTACTTTATAGCAGCAGCCAGCATATTTGAGCCTGAGAGATCTCCAGAGCGACTTGCATGGGCTAAAACCGCAGCATTGCTCGAGACACTGAGATCCTTCATAAAGGATGAAGAAACTAAGAGTGCTTTTGTAGATTTGTTCAACAACAGCATTAACGGACCAGACCACTCAAACAAGCAGTTGAACAAGAGAGAGAAGGAACTCTTGGAGATTTTGCTGAGAAACCTTGATTACCTTGGGTTCGAAATGTTTCGGTGTCATGGTCAGGAATTTTCTCATTATTTGAATCAAGCATGGCATGGTTGGCTATCAAGTTGGAAAAATGAAGGAACCTGCTTTGGAAGAGAAGCTGAGCTGATTGTGCAAATCATAAATGTAATTGCTGGCTATTGGTCAGGAGAACTATATCTCAATCCACAGTACCAGAGGTTGCTGGAGGTCACTAACAGAGTCTGTCACGAGCTCCGTAATTATCAACGCAACAAGGCACATGATAGTGGCAACGACAACCTGAGTAGAACCAGCATCACTACTCCTCAAATAGAATCAGATATGCAAGAACTTGTGCAATTGGTGCTCCAAAATTCCTCAGATGGCGTGCACACCAATGTGAAGAATTCATTCCTCACAGTGGCCAAGGGCTTTTACTATGGCTCATATTGTGACCCAGAGACCATAAACTCTCATATTGAGAAAGTGCTCTTTCAAAAAGTCATGTAA

Predicted protein sequences of Glyma03g31080

Limit To All Plant Sequences

>Glyma03g31080.2   sequence type=predicted peptide   gene model=Glyma03g31080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASQLSFILSHRLPPSCARPAAKSCVTLNFSTPSPYNIFGACVAEVPQDNILKDDIIDEGAVNQVLVTNQIRKKINVIKLMLYSKEDGEISISAYDTAWVALVKNVDLGGNSPQFPSCLEWIANNQLPDGSWGDSEIFLAHDRMLNTLACVIALRSWNMHPEKCEKGMTFFKENLYKLQDENAEHMPIGFEVAFPSLLDLARSLNIEVPDESRILKNIFAMRDLKLKKIPREVLHKVPTTLLHSLEGMPNLDWKQLLKLQSQDGSFLFSPSSTAYALMQTKDGNAHKYLEKTVQRFNGGVPNVYPVDLFERIWVFDRLDRLGISRYFQSEIKDYVAYVSRYWTEKGICWARNSEVQDIDDTAMGFRLLRLHGHQVSPSVFEQFKKNGEFFCFSGQSNQAVTGMFNLYRASQVLFQGEKILEDAKNFSAKFLTEKRAANGLLDKWIITKDLPGEVSYALDVPWYASLPRLETRFYLEQYGGSSDVWIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHCAEWEKIQRWYSEAGLEEFGLSKESLLSAYFIAAASIFEPERSPERLAWAKTAALLETLRSFIKDEETKSAFVDLFNNSINGPDHSNKQLNKREKELLEILLRNLDYLGFEMFRCHGQEFSHYLNQAWHGWLSSWKNEGTCFGREAELIVQIINVIAGYWSGELYLNPQYQRLLEVTNRVCHELRNYQRNKAHDSGNDNLSRTSITTPQIESDMQELVQLVLQNSSDGVHTNVKNSFLTVAKGFYYGSYCDPETINSHIEKVLFQKVM*

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