Glyma03g31050 - SoyBase

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Report for Sequence Feature Glyma03g31050

Feature Type:	gene_model
Chromosome:	Gm03
Start:	38915107
stop:	38920898
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g31050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19330	AT	Annotation by Michelle Graham. TAIR10: ARM repeat protein interacting with ABF2 \| chr5:6508095-6512701 REVERSE LENGTH=710	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0010187	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of seed germination	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0166	KOG	Karyopherin (importin) alpha	JGI		ISS
PTHR23315	Panther	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	JGI		ISS
PF00514	PFAM	Armadillo/beta-catenin-like repeat	JGI		ISS
PF00651	PFAM	BTB/POZ domain	JGI		ISS
UniRef100_B9RTY8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTY8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JNU6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNU6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g31050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g31050

Paralog	Evidence	Comments
Glyma19g33880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g31050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g154000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g31050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g31050

Limit To All Plant Sequences

>Glyma03g31050.1   sequence type=CDS   gene model=Glyma03g31050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGCGTTACCCTGTTGCTAGAAGAAGCTCGAAGCGGAAGCTCGAAGCAGATCTAACCGAAGACCAGACACATACCAAGGCGTCAAAGATCTCTGCAAAGATTCTCAAACAGGTTTCTCTCCTCAACTCCGCTGCTATTCCGTTCACTGCGTTGGATTGTGCTACCGTTAAGAGCGCTGTCCACTCCCTCTCTGTACTCGCCGCAAATGAGGATCTTGTGGATACTATACTGAATTGCGGTGTCGTCCCTGCTCTGGTGAGGCATCTTCGGTTGACAGACAACATGCGGAAATATGACGGTCATGAGGCAGAAACTGTGAAAGATTACAGCGATGGTGTTACGGAACATGATCAGTTTGATGTCGTCAAAAGATGTGCGGTCATCCTTGAGCTTCTTGCCATTGAACAAGAGTATCAGCAGCTCATTGTAGATGCTGGAGCCTTACCCTGTCTTGTTGATTGGTTAAGGATGCAAAAGATCAGTACTACTTCTCAACCACTTATTGACCTTCTAAAGAGAGTAGCTGATGCAATAACCAGCCTAATCCATGAAAATAATGGCATTAAAACCCTATTCAGGATGGAAGGCGGTATAGCTCCTCTTGTTGAATTGCTTGAATTCAATGACATAAAGGTACAGCGAGCAGCTGCACGGGCCTTGCGAACTCTTGCATTTAAAAACGATGGCAATAAAAATCAGATTGTTGAAAGCAATGCATTACCCACTCTTGTACTAATGCTTCAATCAGAGGATCCTAAAACACATTATGAGGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCTCCAGATATTAAGAAAGAAGTTCTTCTAGCAGGTGCTTTACAACCTGTCATTTCTTTACTTAGTTCTTGCTGTTCGGAGAGCCAAAGAGAAGCAGCCCTTTTAATTGGTCAGTTTGCCACAACAGATTCAGATTGCAAGGTTCATATTTGCCAAAGAGGGGCTATTCCACCATTAGTTGACATGCTTAGGTCTCCAGATGCTGAGCTTCAGGAAATGTCAGCTTTTGCACTTGGGAGGTTGGCACAGGACTCACATAATCAAGCTGGTATTGGTCAATGTGGAGGTATAGAGCCTCTGCTCAAACTTCTTGACTCAAAGAAGGTGCCAGTCCAACAAAATGCTATTTTTGCTCTCTATAGTCTCGCTGATAATGAGGACAATGTTGCTGCCATTATTAAGGCTGATGGTTTTCGAAAACTGAAGGCTGGAAATTTCAGAAATCAACAAACTGTAGAATGTGTAGCAAAGACCTTAAAAAAATTAGAGGAAAAGACTCAAGGGCGAGTGTTGAAACACCTAATACATCTTATGCGCTTTGCGGAAGCTGTTCAAAGACGTGTAGCTATTGCTCTTGCTTATTTATGTTCTCCTCATGATCGTAAAACTATATTCATTAACAATAATGGATTAAAATTGCTGCTGGATACTCTTAAATCTTCAAACTTAAAGCAGAAAAGTGATGCTTCAGCGGCGCTTCATAAATTGGCTATCAAAGCCAGTTCTTCTTTCTCTCTTTTTGACATTGCTTCTCCATCACCAACTCTCCAGATGTACTTTGGCGATGAATATGTAAACAATCCTAAACTTTCTGACGTCACATTTCTGGTTGAAGGAAGAAGTTTTTATGCTCATAGAGATTGTTTACTTTCTTCAGATATATTTCGCGCAATGTTTGATGGCAGTTATAGGGAGAGGGAAGCCAAAAGTATAGTGATTCCAAATATTAAATGGGATGTCTTTGAATTGATGATGAGATATATATACACTGGAACAGTAGATGTCAATTTGGATATTGCTCAGGACCTGCTCAGAGCAGCAGATCAGTATCTTCTGGATGGCCTTAAGCGTATCTGTGAATATACTATTTCTCAGGAAATTTCTGAGGAAAATGTTTCACTACTGTACAAGATGTCAGAGGATTTCAATGCTACTTCATTAAAACATTCATGTATACTGTTTATGCTGGAGAAATTTGATAAACTGAGATGTGAACCATGGTATTGTCCTCTGGTTCGTCACATTTTACCAGACATATGCATGTTCTTCTCAACTTTACTTGTCAAATCTCATCCAACTGATTCGTGA

Predicted protein sequences of Glyma03g31050

Limit To All Plant Sequences

>Glyma03g31050.1   sequence type=predicted peptide   gene model=Glyma03g31050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKRYPVARRSSKRKLEADLTEDQTHTKASKISAKILKQVSLLNSAAIPFTALDCATVKSAVHSLSVLAANEDLVDTILNCGVVPALVRHLRLTDNMRKYDGHEAETVKDYSDGVTEHDQFDVVKRCAVILELLAIEQEYQQLIVDAGALPCLVDWLRMQKISTTSQPLIDLLKRVADAITSLIHENNGIKTLFRMEGGIAPLVELLEFNDIKVQRAAARALRTLAFKNDGNKNQIVESNALPTLVLMLQSEDPKTHYEAVGVIGNLVHSSPDIKKEVLLAGALQPVISLLSSCCSESQREAALLIGQFATTDSDCKVHICQRGAIPPLVDMLRSPDAELQEMSAFALGRLAQDSHNQAGIGQCGGIEPLLKLLDSKKVPVQQNAIFALYSLADNEDNVAAIIKADGFRKLKAGNFRNQQTVECVAKTLKKLEEKTQGRVLKHLIHLMRFAEAVQRRVAIALAYLCSPHDRKTIFINNNGLKLLLDTLKSSNLKQKSDASAALHKLAIKASSSFSLFDIASPSPTLQMYFGDEYVNNPKLSDVTFLVEGRSFYAHRDCLLSSDIFRAMFDGSYREREAKSIVIPNIKWDVFELMMRYIYTGTVDVNLDIAQDLLRAADQYLLDGLKRICEYTISQEISEENVSLLYKMSEDFNATSLKHSCILFMLEKFDKLRCEPWYCPLVRHILPDICMFFSTLLVKSHPTDS*

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