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Report for Sequence Feature Glyma03g30880

Feature Type:gene_model
Chromosome:Gm03
Start:38731001
stop:38734152
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g30880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02840AT Annotation by Michelle Graham. TAIR10: Small nuclear ribonucleoprotein family protein | chr4:1264726-1266253 FORWARD LENGTH=116 SoyBaseE_val: 1.00E-59ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005732GO-cc Annotation by Michelle Graham. GO Cellular Compartment: small nucleolar ribonucleoprotein complex SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3428 KOG Small nuclear ribonucleoprotein SMD1 and related snRNPs JGI ISS
PTHR23338Panther SMALL NUCLEAR RIBONUCLEOPROTEIN SM JGI ISS
PTHR23338:SF18Panther SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 JGI ISS
PF01423PFAM LSM domain JGI ISS
UniRef100_G7IEE2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Medicago truncatula RepID=G7IEE2_MEDTR SoyBaseE_val: 2.00E-60ISS
UniRef100_I1N9G0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9G0_SOYBN SoyBaseE_val: 4.00E-73ISS

Expression Patterns of Glyma03g30880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g30880
ParalogEvidenceComments
Glyma19g33700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g30880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g152100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g30880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g30880
>Glyma03g30880.1   sequence type=CDS   gene model=Glyma03g30880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTTGTCAGGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGAACAGTTGTTCATGGCACCATTACAGGTGTTGATATCAGTATGAATACACATTTGAAAACAGTTAAACTAACTCTGAAAGGGAAAAACCCAGTTACTTTGGATCATCTCAGTGTGAGAGGCAACAACATTCGATATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTCGTGGGCGTTAA
Predicted protein sequences of Glyma03g30880
>Glyma03g30880.1   sequence type=predicted peptide   gene model=Glyma03g30880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPKIKPKKPTAGKPLGRGRGRGRGRGRGRGR*






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