Glyma03g30850 - SoyBase

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Report for Sequence Feature Glyma03g30850

Feature Type:	gene_model
Chromosome:	Gm03
Start:	38705674
stop:	38706987
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g30850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63110	AT	Annotation by Michelle Graham. TAIR10: isopentenyltransferase 3 \| chr3:23318437-23319447 REVERSE LENGTH=336	SoyBase	E_val: 1.00E-109	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0008033	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA processing	SoyBase	N/A	ISS
GO:0009691	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0009824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: AMP dimethylallyltransferase activity	SoyBase	N/A	ISS
GO:0016765	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups	SoyBase	N/A	ISS
GO:0052622	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP dimethylallyltransferase activity	SoyBase	N/A	ISS
GO:0052623	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP dimethylallyltransferase activity	SoyBase	N/A	ISS
KOG1384	KOG	tRNA delta(2)-isopentenylpyrophosphate transferase	JGI		ISS
PTHR11088	Panther	TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED	JGI		ISS
PTHR11088:SF20	Panther	CYTOKININ SYNTHASE	JGI		ISS
PF01715	PFAM	IPP transferase	JGI		ISS
UniRef100_Q1W5W3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Adenylate isopentenyltransferase n=1 Tax=Lotus japonicus RepID=Q1W5W3_LOTJA	SoyBase	E_val: 3.00E-143	ISS
UniRef100_UPI0002336C41	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336C41 related cluster n=1 Tax=unknown RepID=UPI0002336C41	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g30850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g30850

Paralog	Evidence	Comments
Glyma19g33680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g30850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g151800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g30850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g30850

Limit To All Plant Sequences

>Glyma03g30850.1   sequence type=CDS   gene model=Glyma03g30850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTATGACCATGTCAAGAGTGATGTGTAGGCCAACACAACCACTGAAAAACGTTCCTTCTAATTCTTCCATTAGTGGCCAAAACCAGATAATAAGGCCAAAAGAGAAGGTAGTGTTGGTGATGGGAGCAACCGGAAGCGGCAAAACAAGGTTGTCGATCGACCTAGCCACATGTTTTCCATCAGAAATAATAAACTCCGACAAAATACAAGTCTACTCAGGCTTGGACGTTGTCACAAACAAAGCAACAAAAGAAGAACAACGTGGGGTCCCACACCACTTGCTGGGGACACAGAACCCAAACACAGAGTTCACAGCCTCCGACTTCTGCCACATGGCATCACACGCCATTGAATCCATCACTCACCGCGAGAAGGTTCCAATAATCGTGGGAGGCTCCAACTCATACATTGAAGCCTTGGTCGACAAGTTCGGGCCACGTTACGATTGGTGTTGTCTCTGGGTTGATGTTTCCACGTCCGTGCTTCACTCCTACGTTGCGCAGCGCGTGGATCACATGCTTGGTGGCGGAATGGTGAACGAGTTGAGACCCTTTTTCAGTCCCAACGGGGATTACTCGAAGGGGATAAGAAAGGCAATTGGGGTGCCGGAATTTGATGCCTATTTTCGAAGGGAAGCGTTTTCGAGCAACGAGACGAGGGTGAGTTTGTTGCAGGATGCGGTGAGGGATGTGAAGAGGAACACGTGCCACCTAGCATGCAAGCAGATTGGGAGGATTCACAGGTTGAGGAGTGTTAAGGGGTGGAAGATTCACCGTGTTTGTGCCACTCCCGTGTTTCAGAAACGTGGCCAGGAAGCGAATGATGCGTGGAAGAACATTGTGGCGCAGCCTTGTGCCTCCATAGTTTCCCATTTTCTCTATAGTACTGCAAATCATGATTATCAACCTCTGGAGTTAATTCGTTAA

Predicted protein sequences of Glyma03g30850

Limit To All Plant Sequences

>Glyma03g30850.1   sequence type=predicted peptide   gene model=Glyma03g30850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTMTMSRVMCRPTQPLKNVPSNSSISGQNQIIRPKEKVVLVMGATGSGKTRLSIDLATCFPSEIINSDKIQVYSGLDVVTNKATKEEQRGVPHHLLGTQNPNTEFTASDFCHMASHAIESITHREKVPIIVGGSNSYIEALVDKFGPRYDWCCLWVDVSTSVLHSYVAQRVDHMLGGGMVNELRPFFSPNGDYSKGIRKAIGVPEFDAYFRREAFSSNETRVSLLQDAVRDVKRNTCHLACKQIGRIHRLRSVKGWKIHRVCATPVFQKRGQEANDAWKNIVAQPCASIVSHFLYSTANHDYQPLELIR*

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