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Report for Sequence Feature Glyma03g30750

Feature Type:gene_model
Chromosome:Gm03
Start:38602133
stop:38604808
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g30750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03330AT Annotation by Michelle Graham. TAIR10: Small nuclear ribonucleoprotein family protein | chr1:818161-819297 REVERSE LENGTH=93 SoyBaseE_val: 2.00E-57ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005732GO-cc Annotation by Michelle Graham. GO Cellular Compartment: small nucleolar ribonucleoprotein complex SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3448 KOG Predicted snRNP core protein JGI ISS
PTHR13829Panther SNRNP CORE PROTEIN FAMILY MEMBER JGI ISS
PF01423PFAM LSM domain JGI ISS
UniRef100_C6SWL3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWL3_SOYBN SoyBaseE_val: 1.00E-61ISS
UniRef100_G7KQV7UniRef Annotation by Michelle Graham. Most informative UniRef hit: SnRNP core Sm protein Sm-X5-like protein n=2 Tax=Papilionoideae RepID=G7KQV7_MEDTR SoyBaseE_val: 2.00E-58ISS

Expression Patterns of Glyma03g30750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g30750 not represented in the dataset
Glyma03g30750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g30750
ParalogEvidenceComments
Glyma19g33600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g30750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g150900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g30750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g30750
>Glyma03g30750.1   sequence type=CDS   gene model=Glyma03g30750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTCTTCTCGTACTTCAAGGATTTGGTGGGGAGGGAAGTAATCGTGGAGCTGAAGAACGATTTGGCCATCAAAGGGACGTTGCATTCTGTTGATCAGTACCTCAACATCAAGCTCGAAAACACTAGCGTCGTCAATCAAGAAAAGTACCCTCACATGCTTTCTGTAAGGAACTGCTTCATCAGAGGTTCGGTAGTGAGATATGTGCAATTGCCTCCAGAAGGTGTGGACATTGAATTATTGCACGATGCCACAAGAAGAGAAGCTCGGGGCGGTTAA
Predicted protein sequences of Glyma03g30750
>Glyma03g30750.1   sequence type=predicted peptide   gene model=Glyma03g30750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFFSYFKDLVGREVIVELKNDLAIKGTLHSVDQYLNIKLENTSVVNQEKYPHMLSVRNCFIRGSVVRYVQLPPEGVDIELLHDATRREARGG*






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