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Report for Sequence Feature Glyma03g30620

Feature Type:gene_model
Chromosome:Gm03
Start:38514638
stop:38515739
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g30620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03360AT Annotation by Michelle Graham. TAIR10: ribosomal RNA processing 4 | chr1:824653-826179 FORWARD LENGTH=322 SoyBaseE_val: 5.00E-77ISS
GO:0009561GO-bp Annotation by Michelle Graham. GO Biological Process: megagametogenesis SoyBaseN/AISS
GO:0004527GO-mf Annotation by Michelle Graham. GO Molecular Function: exonuclease activity SoyBaseN/AISS
PTHR21321Panther PNAS-3 RELATED JGI ISS
PTHR21321:SF2Panther RRP4 JGI ISS
UniRef100_B7FL19UniRef Annotation by Michelle Graham. Most informative UniRef hit: Exosome complex exonuclease RRP4 n=1 Tax=Medicago truncatula RepID=B7FL19_MEDTR SoyBaseE_val: 1.00E-107ISS
UniRef100_I1JNQ7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JNQ7_SOYBN SoyBaseE_val: 2.00E-123ISS

Expression Patterns of Glyma03g30620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g30620
ParalogEvidenceComments
Glyma19g33520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g30620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g149700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g30620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g30620
>Glyma03g30620.2   sequence type=CDS   gene model=Glyma03g30620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACTACTGGCAGAATTACTATTTGTCTCATGCAAAAATGTGTTTAAATAAAAGGAGGCGGAGGACAGCTGCGGATGAGCTAAACATGCGCTGCATTTTCGAGGAAAATGATGTTGTTTGTGCCGAAGTTTGTGGTTTCCAGCATGATGGCTTACACCTTCAAGCAAGGAGTCGGAAATATGGAAAGCTTAATAGAGGTCAACTGCTTATAGTCCCACCTTATTTAGTGAAGAGACAAAAACAACATTTCCATCATCTTGAGGAGTTTGGTATTGATTTGATACTTGGCTGTAATGGATTCATATGGGTTGGGGAACATGTTGAAGCCAAAGATGACATGGTAGAAGATCAAGTGAGCCAATCTGATCCACAAAAAACTTACACAATATTGGAGACAAGAAATTACATATGCAGAGCTGCTAATGCTGTTAGAGTATTGTCAACCTTAGGCTTCAATATTACATTGGAAATCATCAAGGGAATTATTGATCTAAGCCTATCTATGAATCTTGAAATGCACGATATGCTTGGTTCTGAGTTTTGTGTTCTGGTTGCTGAAAAAGAGGCTGAAAGGAGAAGCTCAAGCAAAAGGAAGCGGTAG
Predicted protein sequences of Glyma03g30620
>Glyma03g30620.2   sequence type=predicted peptide   gene model=Glyma03g30620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
YYWQNYYLSHAKMCLNKRRRRTAADELNMRCIFEENDVVCAEVCGFQHDGLHLQARSRKYGKLNRGQLLIVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHVEAKDDMVEDQVSQSDPQKTYTILETRNYICRAANAVRVLSTLGFNITLEIIKGIIDLSLSMNLEMHDMLGSEFCVLVAEKEAERRSSSKRKR*






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