Glyma03g30530 - SoyBase

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Report for Sequence Feature Glyma03g30530

Feature Type:	gene_model
Chromosome:	Gm03
Start:	38473998
stop:	38476847
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g30530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G48010	AT	Annotation by Michelle Graham. TAIR10: receptor-like kinase in in flowers 3 \| chr2:19641465-19643318 FORWARD LENGTH=617	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004702	GO-mf	Annotation by Michelle Graham. GO Molecular Function: receptor signaling protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF895	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_I1JNQ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JNQ1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P93050	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable LRR receptor-like serine/threonine-protein kinase RKF3 n=1 Tax=Arabidopsis thaliana RepID=RKF3_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g30530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g30530

Paralog	Evidence	Comments
Glyma19g33451	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g30530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g149000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g30530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g30530

Limit To All Plant Sequences

>Glyma03g30530.2   sequence type=transcript   gene model=Glyma03g30530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCAGCTTGTTAGGAATCTGAGATCTACCGCAAAGGAGCATCAAATATACAAAATAAATTTATTCGTTTTTCTACAATTCAAGCCTCCTTAGGCTAGTTTAATTTCGGAAGCTTCTTGCTGATGAGGCATAAAAAAACAACATCAACAAAATGAAATGTTGATCGCAATTAATTTTGTTAAACAATTTAATCTCTTAGATATTAAAATAAAAATAAAAAACTCTTTAAAGTGATTAGTTAGCCGATCAAGTTTGAACAACCAACAACCTCAACTCAGGAACTTAACTGACTCCACCAGATAAGTCAATGCAAAGCTCTCTCCATTTCCATCTACTCCCACATGCTCAAACGCAAGAGCTTCCCTGGCCGCAAACAACACCCTCCCATGTCCCCTGAACATAACCGTCCTCCGCGTGGTGAGCGGCGGGCGGCGGCCGTCGTTCGACTCGGGAACAAAGTGCCACTACATCCTGCAAGCCCTCCACCTCCTCCAGGCCGACTACCTCCGTCGCAGCAGCCTCTTCGTTCCGCCGCTAAACACCTCGGAGTCCTGCTGGAACACCTTTCAGTCCTTCATCAACGAGGCCGACCCCAGCATCTCCGACATCCGCTCCTCCTGCGGCTTCAGAACCGAGTGGATCTCCCAGGGCTGCATGAACATCACCACAAAACAACAATTCGAAGACATTGTTCCCCGCAACGCTATCCAACCCGTCCAAGATGACTGCAACCAACCCCTCGAGAACAACGCCCCCTGCGCCCTCTGCACCACCAAGCTCTCCAGCATGCTTTCCTACTTAACCGGAACAACCCAAGGTAACGTCACCGACTGCAGAGCCTATACTCAAATCTACGCCGCTTCTCTCTCTGATCAGTACGGTGTCACCGATCCCGGTACCTCCAAGTGCCTCTTCGGTCTCGATTTTTCCTCTTCCGGCTCCGGTGGTAAGCGACGAAGAACTATTGTTATTGCGGTTGTTTCCGTTTTCTGTGTGGTTTCTTTGTCTGTGTTTGCTTCCCTTTGGGCTTATTTAAGATTCAAGAAGAGGCTAGAGGTTGAGAAAAGGAAGGGTGCTGGAATATCTGAGTTAGGTTTGGGTTCTGGCTTGGATTCAATTAACCAGAGTACCACTTTGATTAGGTTCAGTTTTGATGAAATTAAAAAGGCTACCAGGAACTTCTCCAGGGATAACATTATTGGAAGTGGGGGTTATGGGAATGTTTATAAAGGGATGTTATTGGATGGTAGCCAAGTTGCTTTTAAAAGGTTTAAGAATTGTTCTGTTGCTGGGGATGCTAGCTTCACTCACGAGGTTGAGGTTATTGCGAGTGTGAGGCATGTGAATCTTGTTACCCTAAGAGGCTATTGTACTGCTACGACCAATTTGGAAGGTCACCAGAGGATTATTGTCACTGATTTGATGGAAAACGGGAGTCTTTATGATCATTTATTCGGTTCTGCTAAGAAGAATCTCACTTGGCCAATTCGTCAAAAGATTGCTCTAGGGACCGCTAGGGGGTTGGCTTATTTGCACTATGGAGCTCAACCTTCCATCATCCATAGGGATATTAAGGCTAGTAACATTCTTCTGGACCACAATTTTGAAGCCAAGGTTGCGGATTTCGGGTTGGCAAAGTTCAACCCTGAGGGGATGACTCACATGAGTACTAGAGTGGCTGGGACTATGGGATATGTTGCTCCTGAGTATGCTTTGTATGGACAATTGACAGAGAGGAGTGATGTGTTCAGCTTCGGTGTTGTGCTTCTTGAGCTCCTGAGTGGGAGAAAGGCACTTCAAACCGATGATGATGGCCAACCCGCCGCACTCACTGACTTTGCTTGGTCGTTGGTTAGGAATGGTAGTGCTTTGGATGTTGTTGAAGATGGTATTCCAGAACCTGGTCCACCAGAAGTTCTTGAGAAGTATGTGTTGGTTGCTGTATTGTGTTCTCATCCTCAGCTATATGCTAGGCCTACAATGGATCAGGTTGTTAAGATGCTTGAGACTGATGAATCTGTGCCCTCTTTGATGGAAAGGCCAATTCCTTTTATTGCTGGGAGGCTTGATATTGAGAAATCTGCTCTGAGTAACTCGGGTCAGCTCTGTAGTCCTACTGGTTATCAAGCATATACATTACAAGCTCGACGCAAATCTAATACTAAGGAGGAAGAAGAAGAAGGAAGTTCGGTGGCTGAGACTGTGACCACGGATTGAAATTGGGGAAATTGTATTGTTTTTCCACTGGCTGGTGTAGGCATGATTTTTTTATACATTCAGATTTTAGATTGTATTTGTATTTTTTTTTTTAAAGATTGTGTTGTAAAGGGAAAAAAGGTGTACACAATTTGATTCTTTTTAGAGTTTATAAAGGAATATGGACAATGCCTTCCTCTTGCTCTCGAATAGCCCTCACAGATTGAACCTGAAGACACACGAGATGAACTTTAACATGTTGAAGAACTTCCTCAATTCTCGGATACAGGTTCTTGTTCTTCTAACTAAGCCACACCTGGCACCGAAGACCCTTTTGATTTTCATCTTGTGGGTTTATACTTTTTCTATAGGGTGATTCCACGCCTTTCCTCGGGTTTCATCATTTTTCTGATTCAAAGTTAGCATTTTTTCATGTTTTTTTTTTCCGATTACCACAGTTAGACAGTGAAAGAAAGGTCAAGCTCTATCGTT

Coding sequences of Glyma03g30530

Limit To All Plant Sequences

>Glyma03g30530.1   sequence type=CDS   gene model=Glyma03g30530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTCCATGTCCCTCCCTTTCTATTATTTCTACATCTTTTACGTTGTTTTTCTCCTAACCTTGAATATTTTCCCACCAGCTTCCCTGGCCGCAAACAACACCCTCCCATGTCCCCTGAACATAACCGTCCTCCGCGTGGTGAGCGGCGGGCGGCGGCCGTCGTTCGACTCGGGAACAAAGTGCCACTACATCCTGCAAGCCCTCCACCTCCTCCAGGCCGACTACCTCCGTCGCAGCAGCCTCTTCGTTCCGCCGCTAAACACCTCGGAGTCCTGCTGGAACACCTTTCAGTCCTTCATCAACGAGGCCGACCCCAGCATCTCCGACATCCGCTCCTCCTGCGGCTTCAGAACCGAGTGGATCTCCCAGGGCTGCATGAACATCACCACAAAACAACAATTCGAAGACATTGTTCCCCGCAACGCTATCCAACCCGTCCAAGATGACTGCAACCAACCCCTCGAGAACAACGCCCCCTGCGCCCTCTGCACCACCAAGCTCTCCAGCATGCTTTCCTACTTAACCGGAACAACCCAAGGTAACGTCACCGACTGCAGAGCCTATACTCAAATCTACGCCGCTTCTCTCTCTGATCAGTACGGTGTCACCGATCCCGGTACCTCCAAGTGCCTCTTCGGTCTCGATTTTTCCTCTTCCGGCTCCGGTGGTAAGCGACGAAGAACTATTGTTATTGCGGTTGTTTCCGTTTTCTGTGTGGTTTCTTTGTCTGTGTTTGCTTCCCTTTGGGCTTATTTAAGATTCAAGAAGAGGCTAGAGGTTGAGAAAAGGAAGGGTGCTGGAATATCTGAGTTAGGTTTGGGTTCTGGCTTGGATTCAATTAACCAGAGTACCACTTTGATTAGGTTCAGTTTTGATGAAATTAAAAAGGCTACCAGGAACTTCTCCAGGGATAACATTATTGGAAGTGGGGGTTATGGGAATGTTTATAAAGGGATGTTATTGGATGGTAGCCAAGTTGCTTTTAAAAGGTTTAAGAATTGTTCTGTTGCTGGGGATGCTAGCTTCACTCACGAGGTTGAGGTTATTGCGAGTGTGAGGCATGTGAATCTTGTTACCCTAAGAGGCTATTGTACTGCTACGACCAATTTGGAAGGTCACCAGAGGATTATTGTCACTGATTTGATGGAAAACGGGAGTCTTTATGATCATTTATTCGGTTCTGCTAAGAAGAATCTCACTTGGCCAATTCGTCAAAAGATTGCTCTAGGGACCGCTAGGGGGTTGGCTTATTTGCACTATGGAGCTCAACCTTCCATCATCCATAGGGATATTAAGGCTAGTAACATTCTTCTGGACCACAATTTTGAAGCCAAGGTTGCGGATTTCGGGTTGGCAAAGTTCAACCCTGAGGGGATGACTCACATGAGTACTAGAGTGGCTGGGACTATGGGATATGTTGCTCCTGAGTATGCTTTGTATGGACAATTGACAGAGAGGAGTGATGTGTTCAGCTTCGGTGTTGTGCTTCTTGAGCTCCTGAGTGGGAGAAAGGCACTTCAAACCGATGATGATGGCCAACCCGCCGCACTCACTGACTTTGCTTGGTCGTTGGTTAGGAATGGTAGTGCTTTGGATGTTGTTGAAGATGGTATTCCAGAACCTGGTCCACCAGAAGTTCTTGAGAAGTATGTGTTGGTTGCTGTATTGTGTTCTCATCCTCAGCTATATGCTAGGCCTACAATGGATCAGGTTGTTAAGATGCTTGAGACTGATGAATCTGTGCCCTCTTTGATGGAAAGGCCAATTCCTTTTATTGCTGGGAGGCTTGATATTGAGAAATCTGCTCTGAGTAACTCGGGTCAGCTCTGTAGTCCTACTGGTTATCAAGCATATACATTACAAGCTCGACGCAAATCTAATACTAAGGAGGAAGAAGAAGAAGGAAGTTCGGTGGCTGAGACTGTGACCACGGATTGA

>Glyma03g30530.2   sequence type=CDS   gene model=Glyma03g30530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATCACCACAAAACAACAATTCGAAGACATTGTTCCCCGCAACGCTATCCAACCCGTCCAAGATGACTGCAACCAACCCCTCGAGAACAACGCCCCCTGCGCCCTCTGCACCACCAAGCTCTCCAGCATGCTTTCCTACTTAACCGGAACAACCCAAGGTAACGTCACCGACTGCAGAGCCTATACTCAAATCTACGCCGCTTCTCTCTCTGATCAGTACGGTGTCACCGATCCCGGTACCTCCAAGTGCCTCTTCGGTCTCGATTTTTCCTCTTCCGGCTCCGGTGGTAAGCGACGAAGAACTATTGTTATTGCGGTTGTTTCCGTTTTCTGTGTGGTTTCTTTGTCTGTGTTTGCTTCCCTTTGGGCTTATTTAAGATTCAAGAAGAGGCTAGAGGTTGAGAAAAGGAAGGGTGCTGGAATATCTGAGTTAGGTTTGGGTTCTGGCTTGGATTCAATTAACCAGAGTACCACTTTGATTAGGTTCAGTTTTGATGAAATTAAAAAGGCTACCAGGAACTTCTCCAGGGATAACATTATTGGAAGTGGGGGTTATGGGAATGTTTATAAAGGGATGTTATTGGATGGTAGCCAAGTTGCTTTTAAAAGGTTTAAGAATTGTTCTGTTGCTGGGGATGCTAGCTTCACTCACGAGGTTGAGGTTATTGCGAGTGTGAGGCATGTGAATCTTGTTACCCTAAGAGGCTATTGTACTGCTACGACCAATTTGGAAGGTCACCAGAGGATTATTGTCACTGATTTGATGGAAAACGGGAGTCTTTATGATCATTTATTCGGTTCTGCTAAGAAGAATCTCACTTGGCCAATTCGTCAAAAGATTGCTCTAGGGACCGCTAGGGGGTTGGCTTATTTGCACTATGGAGCTCAACCTTCCATCATCCATAGGGATATTAAGGCTAGTAACATTCTTCTGGACCACAATTTTGAAGCCAAGGTTGCGGATTTCGGGTTGGCAAAGTTCAACCCTGAGGGGATGACTCACATGAGTACTAGAGTGGCTGGGACTATGGGATATGTTGCTCCTGAGTATGCTTTGTATGGACAATTGACAGAGAGGAGTGATGTGTTCAGCTTCGGTGTTGTGCTTCTTGAGCTCCTGAGTGGGAGAAAGGCACTTCAAACCGATGATGATGGCCAACCCGCCGCACTCACTGACTTTGCTTGGTCGTTGGTTAGGAATGGTAGTGCTTTGGATGTTGTTGAAGATGGTATTCCAGAACCTGGTCCACCAGAAGTTCTTGAGAAGTATGTGTTGGTTGCTGTATTGTGTTCTCATCCTCAGCTATATGCTAGGCCTACAATGGATCAGGTTGTTAAGATGCTTGAGACTGATGAATCTGTGCCCTCTTTGATGGAAAGGCCAATTCCTTTTATTGCTGGGAGGCTTGATATTGAGAAATCTGCTCTGAGTAACTCGGGTCAGCTCTGTAGTCCTACTGGTTATCAAGCATATACATTACAAGCTCGACGCAAATCTAATACTAAGGAGGAAGAAGAAGAAGGAAGTTCGGTGGCTGAGACTGTGACCACGGATTGA

Predicted protein sequences of Glyma03g30530

Limit To All Plant Sequences

>Glyma03g30530.1   sequence type=predicted peptide   gene model=Glyma03g30530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSMSLPFYYFYIFYVVFLLTLNIFPPASLAANNTLPCPLNITVLRVVSGGRRPSFDSGTKCHYILQALHLLQADYLRRSSLFVPPLNTSESCWNTFQSFINEADPSISDIRSSCGFRTEWISQGCMNITTKQQFEDIVPRNAIQPVQDDCNQPLENNAPCALCTTKLSSMLSYLTGTTQGNVTDCRAYTQIYAASLSDQYGVTDPGTSKCLFGLDFSSSGSGGKRRRTIVIAVVSVFCVVSLSVFASLWAYLRFKKRLEVEKRKGAGISELGLGSGLDSINQSTTLIRFSFDEIKKATRNFSRDNIIGSGGYGNVYKGMLLDGSQVAFKRFKNCSVAGDASFTHEVEVIASVRHVNLVTLRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSAKKNLTWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHNFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQTDDDGQPAALTDFAWSLVRNGSALDVVEDGIPEPGPPEVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDESVPSLMERPIPFIAGRLDIEKSALSNSGQLCSPTGYQAYTLQARRKSNTKEEEEEGSSVAETVTTD*

>Glyma03g30530.2   sequence type=predicted peptide   gene model=Glyma03g30530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNITTKQQFEDIVPRNAIQPVQDDCNQPLENNAPCALCTTKLSSMLSYLTGTTQGNVTDCRAYTQIYAASLSDQYGVTDPGTSKCLFGLDFSSSGSGGKRRRTIVIAVVSVFCVVSLSVFASLWAYLRFKKRLEVEKRKGAGISELGLGSGLDSINQSTTLIRFSFDEIKKATRNFSRDNIIGSGGYGNVYKGMLLDGSQVAFKRFKNCSVAGDASFTHEVEVIASVRHVNLVTLRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSAKKNLTWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHNFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQTDDDGQPAALTDFAWSLVRNGSALDVVEDGIPEPGPPEVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDESVPSLMERPIPFIAGRLDIEKSALSNSGQLCSPTGYQAYTLQARRKSNTKEEEEEGSSVAETVTTD*

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